PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000289392
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16024 Da    PI: 9.1061
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000289392genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.41.8e-0864932049
                   HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49
                    + KA+ LS L +aevaviifs++gk y +
  MDP0000289392 64 FFRKASTLSALYGAEVAVIIFSPHGKTYVF 93
                   599***********************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.7555797IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.28E-1161109IPR002100Transcription factor, MADS-box
PfamPF003196.5E-96493IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MAGAALISSS KSSSADYKYK PTIANSCKSS STDYKTPSLP EICQTSDRIQ APYMSRFRSG  60
KLDFFRKAST LSALYGAEVA VIIFSPHGKT YVFGHSSVDS VLSRLESTNT PLHGCQQNVS  120
MHARVEDDND VKSSIVESYS RVHWKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349899.19e-41PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A498I2F71e-54A0A498I2F7_MALDO; Uncharacterized protein
STRINGXP_009349899.14e-40(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-12AGAMOUS-like 62