PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000288452 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 1572aa MW: 176177 Da PI: 9.5926 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.5 | 5.4e-22 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kp+++W + LH +F+ a++++ G ++A+Pk+ile+m+v+gLt+++v+SHLQkYR+ MDP0000288452 210 KPKVVWINSLHYQFLLAIRHI-GFDRAVPKNILEFMNVPGLTRANVASHLQKYRI 263 79*******************.********************************6 PP | |||||||
2 | DUF260 | 102.1 | 5.1e-32 | 711 | 808 | 3 | 100 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 a Ck+lrr+C++dC+++ yfp ++p++fa vh+++Gasnv+k+l++lp++ r +a+++l+yeAe+r++d v G+v++i++l+q++ +++ +la+++ MDP0000288452 711 ATCKYLRRRCPSDCIFSSYFPPNNPQRFASVHRIYGASNVSKMLQQLPNHLRAEAADALCYEAECRIQDSVCGCVKTIFQLHQEIYNAECQLAKTR 806 78*******************************************************************************************999 PP DUF260 99 ee 100 +e MDP0000288452 807 AE 808 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.28E-33 | 23 | 141 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-35 | 23 | 147 | No hit | No description |
SMART | SM00448 | 4.8E-31 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.431 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.1E-22 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.01E-27 | 27 | 139 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 2.4E-35 | 182 | 187 | No hit | No description |
SuperFamily | SSF46689 | 6.63E-16 | 207 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 208 | 267 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-21 | 210 | 263 | IPR006447 | Myb domain, plants |
PROSITE profile | PS50891 | 20.354 | 708 | 809 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-32 | 711 | 806 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:3.30.70.330 | 8.4E-18 | 1162 | 1242 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 16.381 | 1168 | 1240 | IPR000504 | RNA recognition motif domain |
CDD | cd12234 | 6.01E-40 | 1168 | 1239 | No hit | No description |
SMART | SM00360 | 4.6E-15 | 1169 | 1236 | IPR000504 | RNA recognition motif domain |
SuperFamily | SSF54928 | 3.31E-34 | 1169 | 1336 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Pfam | PF00076 | 1.0E-12 | 1170 | 1228 | IPR000504 | RNA recognition motif domain |
Gene3D | G3DSA:3.30.70.330 | 3.4E-20 | 1255 | 1336 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PROSITE profile | PS50102 | 16.023 | 1261 | 1332 | IPR000504 | RNA recognition motif domain |
SMART | SM00360 | 4.0E-18 | 1262 | 1328 | IPR000504 | RNA recognition motif domain |
CDD | cd12466 | 2.80E-38 | 1262 | 1331 | No hit | No description |
Pfam | PF00076 | 2.4E-13 | 1263 | 1325 | IPR000504 | RNA recognition motif domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0031053 | Biological Process | primary miRNA processing | ||||
GO:0010445 | Cellular Component | nuclear dicing body | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1572 aa Download sequence Send to blast |
MDATDSAEFR QSSSNSKVSF ADTINILVVD DDATTLTIVS AMLKTWNYKV VPVKNPIDAL 60 ATLREQKGAF DLVVTDLHMP EMDGFELQKH VRDEFKLPVI MMSADDNESV ILKSLEGGVA 120 YYIVKPVSKD DIKNVWQYAV AAKKGKSVVI GEIECAPKEA PGEVDDGSNS EISSDTNEEQ 180 HKKKAEAKTK KAKKRGREDD NEERMVAPKK PKVVWINSLH YQFLLAIRHI GFDRAVPKNI 240 LEFMNVPGLT RANVASHLQK YRIFLKRVAE KARLSKCLSE RVFRSSFAVG HPGPVFNSTE 300 AGDQYSQYLK LQQQTGASPI NASAFQPSSA GIDENTINLL GLIQCPNYQR SSRSSNTMRS 360 MTQLISSGQS RLLNHITQAN LLRHQPWLGN VNHQLLSQVS RRRGDFGMQQ LMNNLGSSGG 420 MSSNAANITG LTTNNILASN LIQMFPQARQ QGIFTNNNPF SYNFGTSGIQ NNFINQQLIG 480 NFSGTHPNCR SEILGKLNNL NGTGGLSSNG FNFNNDTINA LTNGVRNVSL SGTTAPMATL 540 GGSLSSSSSA GFETSTTTSS ANQFSKVFNK NKEDQQQNVS VLPPPAENND NNSTTAPILQ 600 QGGDQDQLPP DFSSFLYPDE VPDATPNQMN PTAADQGLDT AVNKVSDPSA DQVPNSNSSG 660 TYSVKENAPN EQSWSQRQGG DQQVLNPEFR GNVFDPEDYN MLFETPLPFP ATCKYLRRRC 720 PSDCIFSSYF PPNNPQRFAS VHRIYGASNV SKMLQQLPNH LRAEAADALC YEAECRIQDS 780 VCGCVKTIFQ LHQEIYNAEC QLAKTRAEIA LTNSRGGGGQ KNQVNHLHAL HWPPWRARLS 840 GQVPRHRLRQ HHRLLHPPWP RHGNGTHLRP RFWRQKTHYA RPLFAEDALA IISSTFPSTI 900 FSFRTSIWES KKGRKLCLQQ CPGLGPQQWG LFDSELRPAL ELDKHKQSSL ISALLGLSSS 960 TPNSEATSLN QRTKTCYLRH HSLFGLLAPM SLPTPVETLK LKEEGNMQIK AAVRNEKIVY 1020 GNVGDRQSDG LTSEVNSQRV EKRLSEKIRE RIQLSFGSDR FILAADEDDF LHVQPEKRNG 1080 EAEQSVFSGA KSLAADELHS HGEAGEYGVT GYVGGSPFGQ IEESITYFLH VARLLRFESE 1140 APLLPKRRIC IFFDRLVFCS TASRKEMKPI FCGNFEYDAR QNELERLFGR YGKVDRVDMK 1200 SGFAFIYMED ERDAEYAIRG LDRKEFGRKG RRLRVEWTKQ ERGARRPGAS RRSSTNTRPS 1260 KTLFVINFDP YHTRTKDLER HFDSYGKIVS VRIRRNFAFV QYESQEDATR ALEATNMSKL 1320 MDRVISVEYA VRDDDERGDG FSPDRRSRDR SPDRGRDRRR SPSPYKRERG SPDYGRGPSP 1380 GPYRRERGSP DYGRAASPYR RERVSSDYGR GRSPSPYRRD RSDHGRVSSR SPRKERVSAD 1440 RVHDRTRSPY GRERPGDDNG HGPSRSSYKR DRGSPENGPR RSPYKRERDS PRDSPENGRL 1500 PSSSPYKRER VSPENGGGPS GSPYETERAS PENGRVASLN SAPEARDSPN YGGPESPMNE 1560 RYSSRSPQAE EE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-27 | 711 | 809 | 13 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-27 | 711 | 809 | 13 | 111 | LOB family transfactor Ramosa2.1 |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.7894 | 0.0 | bud| fruit| leaf| root |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498JHF8 | 0.0 | A0A498JHF8_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2521 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 3e-58 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000288452 |