PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288378
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 339aa    MW: 38471.8 Da    PI: 9.9956
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288378genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.7e-27196246151
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEE CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveit 51 
                    ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++t
  MDP0000288378 196 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTT 246
                    59*********************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-28182246IPR003657WRKY domain
SuperFamilySSF1182902.88E-23188248IPR003657WRKY domain
PROSITE profilePS5081123.824191246IPR003657WRKY domain
SMARTSM007745.0E-27196250IPR003657WRKY domain
PfamPF031063.5E-20197246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDEPSEQLQN LKSLNSLLLK ETKDRQQQVE SLVQGKAYLE SELSRWILRT PCKEDXLIFG  60
VSGKHNPPPL TSQSLPLSLP FLLPPPPQNP RPPSPYLFTS SSSSSLMTNP PDLLDIDWVS  120
LLSGGTQAAG GXNHDQINSF KPMXMMDNNI SGSAWNTGAD QEEKVGVKRK GGXKMRKAAA  180
SRPRFAFQTR SEDDILDDGY RWRKYGQKAV KNSSYPRSYY RCTHHTCNVK KQVQRLSKDT  240
SIVVTTRCRT TTFSYXETXT NFGDLVVYPK LDFPRFXSFM SHKIGILPVC VLMXFPPRLS  300
SHSAYLKPVF NTRYSLXSHX FRSAQNLHRQ XPHXVDYGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-19186246767Probable WRKY transcription factor 4
2lex_A3e-19186246767Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354007.21e-104probable WRKY transcription factor 24
TrEMBLA0A498KPY21e-125A0A498KPY2_MALDO; Uncharacterized protein
STRINGXP_008354007.11e-128(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.19e-34WRKY DNA-binding protein 43