PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000288192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 2257aa MW: 253196 Da PI: 5.8862 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.4e-18 | 440 | 495 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL+++lgL++rq ++WF+ rR k+kk MDP0000288192 440 PKRQMKTPFQLETLEKAYALDTYPSEAVRAELSERLGLSDRQLQMWFCHRRLKDKK 495 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR00817 | 1.8E-127 | 139 | 436 | IPR004696 | Triose phosphate/phosphoenolpyruvate translocator |
Pfam | PF03151 | 3.2E-107 | 140 | 426 | IPR004853 | Sugar phosphate transporter domain |
SuperFamily | SSF103481 | 7.72E-5 | 183 | 275 | No hit | No description |
SuperFamily | SSF103481 | 9.55E-5 | 357 | 427 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 431 | 496 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.61E-16 | 432 | 496 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.006 | 436 | 496 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-18 | 438 | 500 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.4E-16 | 440 | 495 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.94E-15 | 441 | 496 | No hit | No description |
SMART | SM00571 | 4.8E-22 | 1016 | 1075 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.96 | 1016 | 1075 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.8E-17 | 1018 | 1072 | IPR018501 | DDT domain |
Pfam | PF05066 | 3.6E-15 | 1197 | 1265 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 5.3E-6 | 1416 | 1460 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 8.8E-13 | 1599 | 1671 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005215 | Molecular Function | transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 2257 aa Download sequence Send to blast |
MSDMDRVDLR FCWVMSVIGP TNGEPISYPP AFPTNHGVAS VVTRHRIRTA TLPAQAIPQR 60 KRRRLVRLGP ADRGRERGRE PHMGEAAPPG AAARGVPDKE GDSQTVPRRG LVAGSRRFRR 120 VSDAKVAPIG FFDKYPFILT GFFFFMWYFL NVIFNIMNKK IYNYFPYPYF VSVVHLGVGV 180 VYCLISWAVG LPKRAPIDAN LLKLLIPVAV CHALGHVTSN VSFAAVAVSF THTIKALEPF 240 FNASASQFVL GQSIPLSLWL SLAPVVIGVS MASLTELSFN WLGFISAMIS NISFTYRSIY 300 SKKAMTDMDS TNLYAYISII ALIVCIPPAL ILEGPQLIKY GFNDAIAKVG LVKFVTDLFW 360 VGLFYHLYNQ LATNTLERVA PLTHAVGNVL KRVFVIGFSI VIFGNKISTQ TGIGTAIAIA 420 GVAIYSYLKA KIEEEKRSKP KRQMKTPFQL ETLEKAYALD TYPSEAVRAE LSERLGLSDR 480 QLQMWFCHRR LKDKKEGGPP KKQRKLAPPL PEPPMDDLAH GSEPGSDYGS GSGSGSSPFG 540 HAQLRNVVAR GVADDIPMRG RRYYESPQSK LELRAIACVE AQLGEPLREN GPLLGIEFDP 600 LPPDAFGAPI AQLSNALYLT YVGLDCSIVQ GILCIFLFPA NPFDYLLGEA VAEQQKRSAH 660 ALEGKYERHD AKPNKVCPFF FDKLIIFIHR MMNEFSSQAA PRTLHEYPFL QDHSSIRSDA 720 YGQVSQSHFH DSAIDGPSAR TSSFAVGNEP LSRVHVHGHA SRVRLLSQQE RQAVPYSSPV 780 DDGSVPQRDS FTNVRVNTQF SDPPVVAPEN SNLLSEDQIN DSILRMERKR KSEEVRIAKE 840 VEAHELRIRK ELEKQDILRR KNEERMRKEM ERQDRERRKE EERLMRERQR EEERLKREQK 900 REIERREKFL QKEYIRAEKR RQKEELRKER EVVRRKAALE KATARRLAKE SMELIEDEQL 960 ELMELAAASK GLSSIISIDL DTLQNLDAFR DSLVAFPPRS VQLKRPFAIQ PWINSEANIG 1020 NLLMVWRFLI TFADVLELWP FTLDEFVQAF HDYDSRLLGE IHVALLRLII KDIEDVARTP 1080 TGLGINQNGA ANPGGGHPQI VEGAYAWGFD IRNWQQHLNL LTWPEIFRQL ALSAGFGPQL 1140 KKRSIAWSYT PDKDEGKGCQ DAISNLRNGS AAVNAFAVMQ EKGLLAPRRS RHRLTPGTVK 1200 FAAFHVLSLE GNKGLTVLDL AEKIQKSGLR DLTTSKTPEA SISVALTRDT KLFERIAPST 1260 YRVRAAYRKD PIDAEAVLSA ARKKIQIFEN GILAAEDVDD VERDDVENDE VERDEDFECE 1320 VDEDPEVDDL ATPSVAKKSP DDYSEVIIFS ENGKDSLCGD VGLAVKNEFD KDVLCSPVTG 1380 SKDVFCPSAS SKQCVSGVDI STSNLDQENM EIDESKSGES WVQGLTEGEY SDLSVEERLR 1440 GLVALIGVAN EGNTIRVVLE DRLEAANALK KQMLAEAQLD KSRLKEENVG RLDFPSFMGG 1500 KAEVQATGVE DGQSPLRDVD NRNIEASPVT AENQKSIHGS QGVQNQLNGV PVERTSAAQD 1560 FSMGSDNFLS QQLAYASKRS RSQLKSYIAH RAEEMYAYRS LPLGQDRRHN RYWQFVASAS 1620 RNDPGSGRIF IELNNGSWRL IDTEGAFDAL VTALDTRGIR ESHLRLMLQK IEASFRENGR 1680 KNAHCPNHAG PSKNHVKNEA DEMDSSPDFP SRFDSPESTV CALNSDTTQS SSSFRIELDR 1740 SETEKRAALR RYQDFQKWMW KECFNSSTLC ATKYGKERCR PLFDVCDVCL SCYYFEDSHC 1800 DTCHQTFDAF NGNFDFNEHV IQCKRKRTLE PWDFHIPCTS VPLARRLLKA LIGLVEVCTP 1860 PEALQSVWIE DRRKMWGEKL NASSSMEELL QTLTLFETAV KKDFLSSHFA LTEELLGSCK 1920 QLGVVRDYLD NGSVPVLPWI PLTTAAVALR LHEIDSAITY VKQATPEPTA DKEVGEYLNQ 1980 PMRLLASRSE TELTEAGLNE YTREDNSTHL KSGRNSFRRG RGGREQGRGK RWQKKVNNPK 2040 SVASRRNIRG NENLSQGLRT VGKRTQGQGS GRGRRTVRKR RMKNRAVEGT PLGRMSDIRS 2100 SPESGGESPR NLAEEWDDEK IDMKGDEQGE GYEQGELGEG YEQGELGEGY EQGELGEGYE 2160 QGGALESEDD EQAVGYGQGN WEIGFDGTSS GWNRGLVEAS DNDLDTSEDD NNVMEEVRDE 2220 DSEGDVDVDM SDASDEMPNA MRNDDGTESE SSDDYSE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5y78_A | 5e-75 | 141 | 439 | 21 | 321 | Putative hexose phosphate translocator |
5y78_B | 5e-75 | 141 | 439 | 21 | 321 | Putative hexose phosphate translocator |
5y79_A | 5e-75 | 141 | 439 | 21 | 321 | Putative hexose phosphate translocator |
5y79_B | 5e-75 | 141 | 439 | 21 | 321 | Putative hexose phosphate translocator |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | RKRRR |
2 | 60 | 64 | KRRRL |
3 | 435 | 441 | KRSKPKR |
4 | 488 | 495 | RRLKDKKE |
5 | 894 | 900 | LKREQKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5146 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008383692.2 | 0.0 | LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A498IVJ1 | 0.0 | A0A498IVJ1_MALDO; Uncharacterized protein | ||||
STRING | XP_008383691.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000288192 |