PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000288143
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 534aa    MW: 59320.8 Da    PI: 5.7758
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000288143genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1048.8e-33155209155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kprl+Wt +LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  MDP0000288143 155 KPRLKWTLDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 209
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF479543.21E-750128IPR013763Cyclin-like
PfamPF001347.8E-581128IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.101.6E-583128IPR013763Cyclin-like
PROSITE profilePS5129410.011152212IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-30153210IPR009057Homeodomain-like
SuperFamilySSF466891.0E-15154210IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-22155210IPR006447Myb domain, plants
PfamPF002495.5E-9157208IPR001005SANT/Myb domain
PfamPF143799.9E-24264310IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAFDPLLFCE EGFEEYLGDN GSEEESENCD GFSKKQSSFP LIFLESDMFW ENDELSSLIS  60
KEEQTHVHFS GEISDRSLMA AWNEVIKWIL SVKAHYGFSS LTAILAVNYF DRQAVDELAH  120
RRRMRLVGRQ SGGDPYASSL RFARDSGLVL STDAKPRLKW TLDLHERFIE AVNQLGGADK  180
ATPKTVMKLM GIPGLTLYHL KSHLQKYRLS KNLHGGHVTS GPTKIGTGTV PVSEAGERLI  240
SEANGSQMST MSIGIAPQSN KGLHLNETLE MQIEVQRRLH EQLEVQRHLQ LRIEAQGKYL  300
QSVLEKAQET LGRQNLGTVG LEAAKVQLSE LVSKVSLNSA FTELKELQGL CPQKTQTNQQ  360
PTDCSIDSCL TSCEGLRRDQ DQIHSSGMPL RPNYSGRAAA LLEHKEAAQD QXPMLQNTQL  420
NLCDDLKENM XLSSISKDAE KRMFPAATRS SDLSMSIGLQ GENWNIDSKG RDTDGSFLGR  480
TNSRADSAKV EGAKVSQGYR SVPYFAAKLD LNAXDDNDTS SSCRQFDLNG FSWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-20155211157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-20155211157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-20155211157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-20155211157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-20154211158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.12101e-162bud| fruit| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4272081e-31AM427208.1 Vitis vinifera contig VV78X026806.9, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386803.20.0myb-related protein 2 isoform X1
SwissprotQ9SQQ91e-120PHL9_ARATH; Myb-related protein 2
TrEMBLA0A498IHR00.0A0A498IHR0_MALDO; Uncharacterized protein
STRINGXP_008386803.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-117G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]