PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287735
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 106aa    MW: 11338.7 Da    PI: 8.7947
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287735genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.12.1e-2844100259
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                    ++vrY++ClkNhAas Ggh++ GCgEfmp  g+e ++ +lkCaAC+CHRnFH +e + 
  MDP0000287735  44 SRVRYRKCLKNHAASSGGHVLNGCGEFMPG-GDEDNSGSLKCAACECHRNFHIKEIDR 100
                    689**************************9.7777******************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-1833105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.0E-264698IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.6E-264798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.1674897IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
SRRDPDPTPT PVIVTPSAAT TIASRSNFKA PAAPPQLRPS TAASRVRYRK CLKNHAASSG  60
GHVLNGCGEF MPGGDEDNSG SLKCAACECH RNFHIKEIDR EHVSNN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392268.13e-52zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW73e-22ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A498KE113e-55A0A498KE11_MALDO; Uncharacterized protein
STRINGXP_008392268.11e-51(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-24homeobox protein 24