PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287465
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HRT-like
Protein Properties Length: 1049aa    MW: 115664 Da    PI: 7.1815
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287465genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like56.83.7e-18206236131
       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                    iCGv  +dGsvC+++Pv+gR+RC+eHKGmRi
  MDP0000287465 206 ICGVDVGDGSVCRTTPVPGRQRCAEHKGMRI 236
                    8*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF511612.08E-17325384IPR011004Trimeric LpxA-like
CDDcd033541.69E-26325384No hitNo description
Gene3DG3DSA:2.160.10.102.3E-13326384No hitNo description
PROSITE profilePS513757.739497527IPR002885Pentatricopeptide repeat
PfamPF015350.051504527IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.422528562IPR002885Pentatricopeptide repeat
PfamPF015355.7E-5532560IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.4E-6532563IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.3563593IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.434599629IPR002885Pentatricopeptide repeat
PfamPF015350.28603626IPR002885Pentatricopeptide repeat
PfamPF144324.2E-20660723IPR032867DYW domain
CDDcd147981.48E-12785903No hitNo description
SuperFamilySSF525405.31E-119621048IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.5E-99751047IPR002182NB-ARC
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1049 aa     Download sequence    Send to blast
ILVGPSDWKD HSLGKEGAER YRVHNLPEKE SPGVYELGVS GCSSQGHEIG KHDPGCIVPV  60
YLGQADNVRT RLQQYGRSGA HLGKEFEDLL SRGNSIAYRW ASLENQSDAL KTENRRLGTY  120
NYAWNRNNNG ARRPDDVHQK LKEITSSQKK VGIRIESSKP ISTGDKFGAY DDKDIDNSPF  180
QVFKLSRAQP RLVSYRSITE ENTGIICGVD VGDGSVCRTT PVPGRQRCAE HKGMRIKGST  240
GVGISNSNVD SQCGFISNYD PVESCIFILA DGSSCRRHPI QGRKMCASSG AQAMDLEPEA  300
AGACTALEDR GRVRGGHTPS GEDRKGVLFD HATGVVVGET AVIGNNVSIL HHVTLGGTGK  360
AGGDRHPKIG DGVLIGASAT ILGNFNHNNG FSNFSPADGE LHHLFPVQIP GQTEPARPAL  420
SQSQNVSTPL RTNTKDVDLM RLCEEGKVGE ALEFMGRGVS ADYGVFCVLL ESCDGLKSLE  480
VGRKVHEFLR QSPFRGDIEL NTRLVQMYWR CGSMRDARKL FDRMCERSMG LWHSMISGYA  540
VNGQRDEGLL LFEQMRNSGL KPDKETFLVV LAAYASAEAV DEGYALFESM TNEYEIVPEI  600
QHYLGLIDVL GKSGHLNEVE EFIEKMPFEP NVEAWEALRN FAQIHRDIEL EDRAEDLLEA  660
KERALQYHSE RLAIAYGLIS TPARQTLRII KNLQICGDCH NAMSKIVGRE LIVRDNKRFH  720
HFRDGEGVLL WGLLVKLSAL PTLYTSTLLV SFSYFSILCS PLISVVPRAS MDSAKVLETL  780
YTFPVEGILN SVTSLAAQEI SLFRGFKKEL AKLRQSVLAI QGFLGDVSYQ PRNRGKAVED  840
WVKKLKDVAH DADDVLEDIN YEVLRRKVEI QNHMKKKVLN FFSLSNPILF RQKMAHKIKN  900
INASLAALKG DAAFIGLVAR RVDQTPPGMG NRETVSSFGH DEKIIGREKI VSDIIATLIE  960
SKNQEDCLSR LNSAPGSIVI VTTRSANVAT STDTKTMPRC DLERLSVDEC WSILKSEAFP  1020
NGAPPLDPTQ ENIGRAIAAK CAGVPLVAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4n69_A5e-29319390157228Serine Acetyltransferase Apoenzyme
4n69_B5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6a_A5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6a_B5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_A5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_B5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_C5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_D5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_E5e-29319390157228Serine Acetyltransferase Apoenzyme
4n6b_F5e-29319390157228Serine Acetyltransferase Apoenzyme
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.128391e-148bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8768312e-90JX876831.1 Prunus persica clone Contig2622 serine acetyltransferase (SAT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498KF640.0A0A498KF64_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94093139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-52effector of transcription2