PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000287350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28339.1 Da PI: 9.4505 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 6 | 55 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g MDP0000287350 6 KFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 89****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 5 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-21 | 6 | 65 | No hit | No description |
PROSITE profile | PS51032 | 22.036 | 6 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-11 | 6 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-20 | 6 | 64 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.8E-40 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVQSRKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPILNNNNS DQDTKSPTDQ DTPWSPKALS ELLRAKLRKC CKXQSPSLTC LRLDNDNSHI 120 GVWQKRPAGS RASSNWVMXI ELGKKKKQGS NHDNQEELMS SLSSSSSSSS MVGLTEGGVS 180 VVEPDEEDKL AMQMIEELLN WNYPTPPPTE VTNFGELKVA WPVGEQAYTP GRRSHQTDHP 240 RYTXFPKAIG TN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 6 | 70 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00527 | DAP | Transfer from AT5G25390 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ842595 | 3e-76 | HQ842595.1 Rosa chinensis clone 1 putative DREB protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008347734.2 | 1e-152 | ethylene-responsive transcription factor SHINE 2-like | ||||
Swissprot | Q3E958 | 2e-75 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A498JFA2 | 1e-150 | A0A498JFA2_MALDO; Uncharacterized protein | ||||
STRING | XP_008347734.1 | 1e-151 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25390.2 | 7e-67 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000287350 |
Publications ? help Back to Top | |||
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