PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287321
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 608aa    MW: 67236.9 Da    PI: 9.5153
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.83.6e-1132466053374
           GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                     lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf  AL++r+ +s+ ++y+ l+ ++ +  +s++ ++al+ ++ +sP++kfsh+t 
  MDP0000287321 246 GLLLQCAEFVAMDSLDDASDLLPEIAELSSPFGSSPERVGAYFSHALQTRVISSCLGTYSPLTNRTLTLAQSQRIFNALQSYNSISPLVKFSHFTS 341
                    58******************************************************************99************************** PP

           GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    NqaI +a++ge++vH+iD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l  k  +  +l++L
  MDP0000287321 342 NQAIFQALDGEDHVHVIDLDIMQGLQWPGLFHILASRSKKIRSMRITGFGS----SSELLESTGRRLADFASSLGLPFEFQPLEGKIGSITDLSQL 433
                    ***************************************************....9**************************988888999***** PP

           GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                     ++p Ea++V++++  h l+d ++s       +L+l+ sl+Pk+++++eq+++h s+sFl rf+eal+yysalfd+l  +l+++s er++vE++l+
  MDP0000287321 434 GIRPSEATVVHWMH--HCLYDVTGSDLA----TLRLLGSLRPKLITIAEQDLSH-SGSFLSRFVEALHYYSALFDALGDGLGADSLERHMVEQQLF 522
                    *************9..888877777777....**********************.899************************************** PP

           GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    g ei+n++a  g +r+ + + +e+W + l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  MDP0000287321 523 GYEIRNILAVGGPKRTGEVK-VERWGDELKRVGFGPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 605
                    **************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.30.301.1E-153119IPR014722Ribosomal protein L2 domain 2
SuperFamilySSF501045.72E-153133IPR008991Translation protein SH3-like domain
CDDcd060909.60E-48688No hitNo description
PfamPF017773.9E-3052133IPR001141Ribosomal protein L27e
ProDomPD0093965.0E-2460133IPR001141Ribosomal protein L27e
PROSITE profilePS5098555.191218585IPR005202Transcription factor GRAS
PfamPF035141.2E-110246605IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MVKFLKPNKA VINLQGRYAG RKAVIVRAFD EGTRDRPYGH CLVAGIKKYP AKVIRKDSAK  60
KTAKKSRVKA FIKLVNYQHL MPTRYTLDVD LKDVVNVECL QTKDKKVTAL KEVKKRFEER  120
FKTGKNRWFF TKLSRTTTKI GMMGLETGVV GLEIQRGWVM LQSLVPQSPI TAATPNNNNP  180
TSSSSSMKTK RVDRDLAGSG SGDSDAEDPS FTKRPNSGRN FRERTADDRD TEPVAEGESD  240
GLRLLGLLLQ CAEFVAMDSL DDASDLLPEI AELSSPFGSS PERVGAYFSH ALQTRVISSC  300
LGTYSPLTNR TLTLAQSQRI FNALQSYNSI SPLVKFSHFT SNQAIFQALD GEDHVHVIDL  360
DIMQGLQWPG LFHILASRSK KIRSMRITGF GSSSELLEST GRRLADFASS LGLPFEFQPL  420
EGKIGSITDL SQLGIRPSEA TVVHWMHHCL YDVTGSDLAT LRLLGSLRPK LITIAEQDLS  480
HSGSFLSRFV EALHYYSALF DALGDGLGAD SLERHMVEQQ LFGYEIRNIL AVGGPKRTGE  540
VKVERWGDEL KRVGFGPVSL GGNPAAQASL LLGMFPWKGY TLVEENGCLK LGWKDLSLLT  600
ASAWQPLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-15825060625380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104115KKVTALKEVKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167090.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315770.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A498HEB90.0A0A498HEB9_MALDO; Uncharacterized protein
STRINGXP_008357507.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]