PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000287069 | ||||||||
Common Name | LOC103435166, MdTCP2B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | TCP | ||||||||
Protein Properties | Length: 484aa MW: 52876.7 Da PI: 7.7671 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.7 | 4.2e-34 | 71 | 231 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec 73 g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+L +d++sk+ieWL+++a ai el+++ +++sa MDP0000287069 71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIELYDLQDRLNYDQPSKAIEWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-E 165 689*************************************************************999999888888887777777774444421.2 PP TCP 74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmri 132 + ++++++++n+s++ + +++a+s+ s++s+ s l+l++ r+kar+rarer ++++ + MDP0000287069 166 fdqNYNQNQNQTGNQSQHLSLSKSACSSTSETSKGSGLSLSRsevrVNRSKARERARERAAKDKDK 231 334566666666677777777777788888888888888887533355599999999987776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-42 | 72 | 230 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.371 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.996 | 211 | 229 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MEVEEIQASN KFPRIGNGSS RDHKPSPEDD DNQDPSCLEV KRDAATTAAA DAGNRLRGWH 60 HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIE LYDLQDRLNY DQPSKAIEWL 120 IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY NQNQNQTGNQ 180 SQHLSLSKSA CSSTSETSKG SGLSLSRSEV RVNRSKARER ARERAAKDKD KESIESAYPH 240 NISQQNSSFT ELLTAGIGTA HNNNDSRTAS AHHHQQNHGC GGGEPILFHK APAPMDYFSP 300 GLLGLSSSAR THHSAGFSGQ IHLGMNSIPQ TMSVVSPFNV SGEHHHGHHS SELQHFSFVP 360 DLIPVTTSSE PGNGGDYNLN FSISSSGGLA GFNRGTLQSN SSSSPSLMPH HLQRFSPIDG 420 SSNVPFFIGA AAAAAAPTME NHHHHHHHHH QQHQQQFPGG FDRRLQQLYG DGTRHADHKG 480 KAKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-22 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-22 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.663 | 0.0 | bud| fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB531020 | 0.0 | AB531020.1 Malus x domestica MdTCP2B mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280942.1 | 0.0 | uncharacterized protein LOC103435166 | ||||
Refseq | XP_008371780.2 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_008371781.2 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_008371782.2 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_008371783.2 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_008371784.2 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_028957610.1 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
Refseq | XP_028957611.1 | 0.0 | uncharacterized protein LOC103435166 isoform X1 | ||||
TrEMBL | D5MRQ1 | 0.0 | D5MRQ1_MALDO; MdTCP2B protein | ||||
STRING | XP_008371780.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000287069 |
Entrez Gene | 103435166 |
Publications ? help Back to Top | |||
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