PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000287040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRAS | ||||||||
Protein Properties | Length: 1377aa MW: 155794 Da PI: 6.404 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 355.4 | 8.4e-109 | 339 | 708 | 2 | 372 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL+ecAeav+ d+++a++lL++++++ sp+ d++qRla+yf+ +L+arla+ + y l + + + ++e l+a+++++ ++P+ k+ h+ MDP0000287040 339 XKLLTECAEAVAXYDQQAANELLKQIRQHTSPYXDSTQRLAHYFADGLEARLAGARNPSYCPLIMMHIP---EAEILKAYQVYVTACPFKKMVHFF 431 689***************************************************887777777777776...89********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN++I++ +e+++r+HiiDf+is+GlQWp+L+q+L+++++gpp+l iT ++ p++g +e +eetg+rL+k++e+ +vpfe+nv +ak++e++ l MDP0000287040 432 ANRTIMKTAEKATRLHIIDFGISYGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGxrPAEIIEETGRRLTKYCERYNVPFEYNV-IAKKWETIXL 526 *******************************************************999999***********************9.7********* PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e++r++++E+++Vn++++l++++de+v +++rd+vL+l+k+++P+++ + + +n++ F++rf +al ++ ++fd++ea++pre+e+r+ Er MDP0000287040 527 EDFRIDRNEVTVVNCMHRLKQIPDETVMANNPRDAVLNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFYTFFDMYEATVPREDEQRMLFER 622 ************************************************************************************************ PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +++gr+i nvvaceg+er+er et+++W++r + GFk++pl+ k++k++ + ++ + +e++ +++++gWk+r +++++a MDP0000287040 623 AIFGRDIINVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLKKVKTMSKVMGyHSDFLIEDDGQWMLQGWKGRIVLALTA 708 *****************************************************999988888******************999876 PP | |||||||
2 | GRAS | 379.7 | 3.5e-116 | 1005 | 1373 | 3 | 372 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+av+s d++ a++l++++++++sp+g++++Rla yf++AL+arla+s + y+ l + +t+ +e l+a++++ +P++k+ ++ MDP0000287040 1005 TMLTQCAQAVASYDQQTASELIKKIRKHSSPYGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHQVYITSCPFMKMMYF 1095 689**************************************************999999999777777...89********************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 aN++I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lR T+++ p++g +e++eet +rL+k+A+++ vpfe+nv +a+++e+ MDP0000287040 1096 FANRTIMKLAENATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRFTAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWET 1188 ********************************************************9****************************9.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +++e+L+v+++E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++++ + +ns+ F++rf eal +ys+lfd++ea++pre+e+r MDP0000287040 1189 IRFEDLKVDRNELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFIHGVVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHR 1282 ********************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + E ++ gr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ + + +r++e+ +++++gWk+r ++++Sa MDP0000287040 1283 LMFEGAVYGRDIMNVIACEGIERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIVMALSA 1373 ************************************************************9999999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.209 | 312 | 689 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-106 | 339 | 708 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 65.379 | 977 | 1354 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-113 | 1005 | 1373 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin |
Sequence ? help Back to Top |
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Protein Sequence Length: 1377 aa Download sequence Send to blast |
MDTLYVERFS APTEGFEFGN GSNSVCSDEN LADGFKENHE STNPNSLPSN LDHPSVSXTS 60 LXAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACKLQ QSLALQIAEK SFHDALNSEN 120 PPLLNQPTFS VYQSFENSDV GFHSSDGSIA SFYSSNGYIS ANSGCGWDVS QLCHVQSSLF 180 EPISDTLNVX DSFSVEEGIK FVPKKSCEII DPKXDQLVPS GSDQWXPGPC XLIGNLASKN 240 GYXSTNGSKG KKNHXREDGY DTEEGRRNKQ SAAACDSSDL QEIYDXVLQS VNHEPDSCSH 300 DEPSQSKGNX MLQHKKQSKG SKASXGKKQN SNGKVVXLXK LLTECAEAVA XYDQQAANEL 360 LKQIRQHTSP YXDSTQRLAH YFADGLEARL AGARNPSYCP LIMMHIPEAE ILKAYQVYVT 420 ACPFKKMVHF FANRTIMKTA EKATRLHIID FGISYGLQWP CLIQSLSEKT GGPPKLCITL 480 IEVPQPGXRP AEIIEETGRR LTKYCERYNV PFEYNVIAKK WETIXLEDFR IDRNEVTVVN 540 CMHRLKQIPD ETVMANNPRD AVLNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFY 600 TFFDMYEATV PREDEQRMLF ERAIFGRDII NVVACEGQER VERPETYKQW QARYARIGFK 660 QLPLDRALLK KVKTMSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALTALK PAFYVPMERF 720 TVGQGSNQNL GNHESTNPIF LPTNLDHNHS DSSSSQNLVN GFQVNHEPTN TLFLPPNSDH 780 PSESEFSSSG SDGDTFDISV CNHPVLKYIS DILLEEDLEG KPCMLQDCLA LQAAEKSFYD 840 VLKPKGPSSS QSPLPVDRSF ENSDDDFKES CHISIGCVAA RTDSVSGSEI SHIQSCPVES 900 SSDAYNSTYR LKSKKNHLRE DGDYTEEGRS NKQSAASADG PEPQEMFDEV LLYKDARRAF 960 ESCSDDQSVK TDGSGKLKCN KQPKVSKAAR SKTKNKNREV VDLCTMLTQC AQAVASYDQQ 1020 TASELIKKIR KHSSPYGEAT ERLAYYFANA LEARLAGSRT PSYSPLLSPQ TPATEILKAH 1080 QVYITSCPFM KMMYFFANRT IMKLAENATR LHIIDFGISY GFQWPCLIQR LSERCGGPPN 1140 LRFTAIELPQ PGFRPTERVE ETMRRLEKYA KRFVVPFEYN VIAQKWETIR FEDLKVDRNE 1200 LTVVNCMRRL RHIPDETVVM SSPRDTVLNL IKKINPDLFI HGVVNGTYNS PFFVKRFREA 1260 LFHYSSLFDM FEATIPREDE HRLMFEGAVY GRDIMNVIAC EGIERVERPE TYKHWQVRYQ 1320 RAGFKQVPLD QELMRKVKAM LKLMRYHNDF RIDEDGHWML QGWKGRIVMA LSALKPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-45 | 344 | 1376 | 7 | 379 | Protein SCARECROW |
5b3h_D | 1e-45 | 344 | 1376 | 7 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.26925 | 0.0 | leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028945141.1 | 0.0 | uncharacterized protein LOC103447524 | ||||
TrEMBL | A0A498KAI2 | 0.0 | A0A498KAI2_MALDO; Uncharacterized protein | ||||
STRING | XP_004295969.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF131 | 34 | 339 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59450.1 | 1e-167 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000287040 |