PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287040
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 1377aa    MW: 155794 Da    PI: 6.404
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287040genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.48.4e-1093397082372
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL+ecAeav+  d+++a++lL++++++ sp+ d++qRla+yf+ +L+arla+  +  y  l + + +   ++e l+a+++++ ++P+ k+ h+ 
  MDP0000287040 339 XKLLTECAEAVAXYDQQAANELLKQIRQHTSPYXDSTQRLAHYFADGLEARLAGARNPSYCPLIMMHIP---EAEILKAYQVYVTACPFKKMVHFF 431
                    689***************************************************887777777777776...89********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN++I++ +e+++r+HiiDf+is+GlQWp+L+q+L+++++gpp+l iT ++ p++g   +e +eetg+rL+k++e+ +vpfe+nv +ak++e++ l
  MDP0000287040 432 ANRTIMKTAEKATRLHIIDFGISYGLQWPCLIQSLSEKTGGPPKLCITLIEVPQPGxrPAEIIEETGRRLTKYCERYNVPFEYNV-IAKKWETIXL 526
                    *******************************************************999999***********************9.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    e++r++++E+++Vn++++l++++de+v  +++rd+vL+l+k+++P+++ +   +  +n++ F++rf +al ++ ++fd++ea++pre+e+r+  Er
  MDP0000287040 527 EDFRIDRNEVTVVNCMHRLKQIPDETVMANNPRDAVLNLIKRINPDLFMHGVVNGTYNAPAFVTRFKQALFHFYTFFDMYEATVPREDEQRMLFER 622
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                    +++gr+i nvvaceg+er+er et+++W++r  + GFk++pl+    k++k++ + ++    + +e++ +++++gWk+r +++++a
  MDP0000287040 623 AIFGRDIINVVACEGQERVERPETYKQWQARYARIGFKQLPLDRALLKKVKTMSKVMGyHSDFLIEDDGQWMLQGWKGRIVLALTA 708
                    *****************************************************999988888******************999876 PP

2GRAS379.73.5e-116100513733372
           GRAS    3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96  
                     + L++cA+av+s d++ a++l++++++++sp+g++++Rla yf++AL+arla+s +  y+ l + +t+    +e l+a++++   +P++k+ ++
  MDP0000287040 1005 TMLTQCAQAVASYDQQTASELIKKIRKHSSPYGEATERLAYYFANALEARLAGSRTPSYSPLLSPQTP---ATEILKAHQVYITSCPFMKMMYF 1095
                     689**************************************************999999999777777...89********************* PP

           GRAS   97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 
                      aN++I++ +e+++r+HiiDf+is+G+QWp+L+q L++R +gpp+lR T+++ p++g   +e++eet +rL+k+A+++ vpfe+nv +a+++e+
  MDP0000287040 1096 FANRTIMKLAENATRLHIIDFGISYGFQWPCLIQRLSERCGGPPNLRFTAIELPQPGfrPTERVEETMRRLEKYAKRFVVPFEYNV-IAQKWET 1188
                     ********************************************************9****************************9.7****** PP

           GRAS  189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 
                     +++e+L+v+++E ++Vn++ +l +++de+v ++s+rd+vL+l+k+++P+++++   +  +ns+ F++rf eal +ys+lfd++ea++pre+e+r
  MDP0000287040 1189 IRFEDLKVDRNELTVVNCMRRLRHIPDETVVMSSPRDTVLNLIKKINPDLFIHGVVNGTYNSPFFVKRFREALFHYSSLFDMFEATIPREDEHR 1282
                     ********************************************************************************************** PP

           GRAS  283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 
                      + E ++ gr+i+nv+aceg er+er et+++W+ r ++aGFk+vpl+++ + ++k++l+ +   + +r++e+ +++++gWk+r ++++Sa
  MDP0000287040 1283 LMFEGAVYGRDIMNVIACEGIERVERPETYKHWQVRYQRAGFKQVPLDQELMRKVKAMLKLMRyHNDFRIDEDGHWMLQGWKGRIVMALSA 1373
                     ************************************************************9999999**********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.209312689IPR005202Transcription factor GRAS
PfamPF035142.9E-106339708IPR005202Transcription factor GRAS
PROSITE profilePS5098565.3799771354IPR005202Transcription factor GRAS
PfamPF035141.2E-11310051373IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 1377 aa     Download sequence    Send to blast
MDTLYVERFS APTEGFEFGN GSNSVCSDEN LADGFKENHE STNPNSLPSN LDHPSVSXTS  60
LXAGSDADNI DISDCNQPVL KYISDILLEE DLEGKACKLQ QSLALQIAEK SFHDALNSEN  120
PPLLNQPTFS VYQSFENSDV GFHSSDGSIA SFYSSNGYIS ANSGCGWDVS QLCHVQSSLF  180
EPISDTLNVX DSFSVEEGIK FVPKKSCEII DPKXDQLVPS GSDQWXPGPC XLIGNLASKN  240
GYXSTNGSKG KKNHXREDGY DTEEGRRNKQ SAAACDSSDL QEIYDXVLQS VNHEPDSCSH  300
DEPSQSKGNX MLQHKKQSKG SKASXGKKQN SNGKVVXLXK LLTECAEAVA XYDQQAANEL  360
LKQIRQHTSP YXDSTQRLAH YFADGLEARL AGARNPSYCP LIMMHIPEAE ILKAYQVYVT  420
ACPFKKMVHF FANRTIMKTA EKATRLHIID FGISYGLQWP CLIQSLSEKT GGPPKLCITL  480
IEVPQPGXRP AEIIEETGRR LTKYCERYNV PFEYNVIAKK WETIXLEDFR IDRNEVTVVN  540
CMHRLKQIPD ETVMANNPRD AVLNLIKRIN PDLFMHGVVN GTYNAPAFVT RFKQALFHFY  600
TFFDMYEATV PREDEQRMLF ERAIFGRDII NVVACEGQER VERPETYKQW QARYARIGFK  660
QLPLDRALLK KVKTMSKVMG YHSDFLIEDD GQWMLQGWKG RIVLALTALK PAFYVPMERF  720
TVGQGSNQNL GNHESTNPIF LPTNLDHNHS DSSSSQNLVN GFQVNHEPTN TLFLPPNSDH  780
PSESEFSSSG SDGDTFDISV CNHPVLKYIS DILLEEDLEG KPCMLQDCLA LQAAEKSFYD  840
VLKPKGPSSS QSPLPVDRSF ENSDDDFKES CHISIGCVAA RTDSVSGSEI SHIQSCPVES  900
SSDAYNSTYR LKSKKNHLRE DGDYTEEGRS NKQSAASADG PEPQEMFDEV LLYKDARRAF  960
ESCSDDQSVK TDGSGKLKCN KQPKVSKAAR SKTKNKNREV VDLCTMLTQC AQAVASYDQQ  1020
TASELIKKIR KHSSPYGEAT ERLAYYFANA LEARLAGSRT PSYSPLLSPQ TPATEILKAH  1080
QVYITSCPFM KMMYFFANRT IMKLAENATR LHIIDFGISY GFQWPCLIQR LSERCGGPPN  1140
LRFTAIELPQ PGFRPTERVE ETMRRLEKYA KRFVVPFEYN VIAQKWETIR FEDLKVDRNE  1200
LTVVNCMRRL RHIPDETVVM SSPRDTVLNL IKKINPDLFI HGVVNGTYNS PFFVKRFREA  1260
LFHYSSLFDM FEATIPREDE HRLMFEGAVY GRDIMNVIAC EGIERVERPE TYKHWQVRYQ  1320
RAGFKQVPLD QELMRKVKAM LKLMRYHNDF RIDEDGHWML QGWKGRIVMA LSALKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4534413767379Protein SCARECROW
5b3h_D1e-4534413767379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.269250.0leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945141.10.0uncharacterized protein LOC103447524
TrEMBLA0A498KAI20.0A0A498KAI2_MALDO; Uncharacterized protein
STRINGXP_004295969.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59450.11e-167GRAS family protein