PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000287039

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 410aa MW: 47214.6 Da PI: 7.6561

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000287039	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	339.9	4.4e-104	71	407	34	373
GRAS 34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLl 129 pm +la+yf+ +L+arla+ ++ +y+ l ++ts ++e l+ ++++ sP+ +s+++aN++I++ e+++r+HiiDf+is+G+QWp+++ MDP0000287039 71 FNHPMLKLAHYFADGLEARLAGATTPTYSFLVGTQTS---TAEILKGYQVYISSSPFKLMSNFMANRTIMKLSENATRLHIIDFGISYGFQWPCFI 163 4589*************************999999...89************************************************** PP GRAS 130 qaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvslese 223 q L++R++gpp+lRiT+++ p++g +e++eet++rL+k+Ae+++vpfe nv +a+++e++++e+L++++ E ++Vn++ +l++++de+v +s+ MDP0000287039 164 QHLSERTGGPPKLRITAIELPQPGfrPTERVEETARRLKKYAERFNVPFECNV-IAQKWETIKFEDLKIDRSELTVVNCMCRLKHIPDETVMASSP 258 *******************9************************9.7************************************* PP GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 rd vLkl+k+++P+v+++ + +n++ F++rf eal++ysa+fd +ea++pre+e r+ E+++ gr+ivnvvaceg er+er et+++W+ r MDP0000287039 259 RDIVLKLIKKINPDVFIHGVVNGTYNAPFFATRFREALYHYSAFFDIFEATVPREDEMRQLFEKAIHGRDIVNVVACEGLERVERPETYKQWQVRX 354 ******************************************************************************************** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +aGFk++pl++ k +k++l+ +++d +r++e+ +++++ W++r+++++S W MDP0000287039 355 VRAGFKQLPLDQALLKRVKRMLKSYHDD-FRIDEDGNWMLQSWRGRTVLALSIW 407 **********************66.*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	54.001	1	389	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-101	71	407	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MDTLLERYDV SMERFNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSPYSSAG 60 SDGDSIDPND FNHPMLKLAH YFADGLEARL AGATTPTYSF LVGTQTSTAE ILKGYQVYIS 120 SSPFKLMSNF MANRTIMKLS ENATRLHIID FGISYGFQWP CFIQHLSERT GGPPKLRITA 180 IELPQPGFRP TERVEETARR LKKYAERFNV PFECNVIAQK WETIKFEDLK IDRSELTVVN 240 CMCRLKHIPD ETVMASSPRD IVLKLIKKIN PDVFIHGVVN GTYNAPFFAT RFREALYHYS 300 AFFDIFEATV PREDEMRQLF EKAIHGRDIV NVVACEGLER VERPETYKQW QVRXVRAGFK 360 QLPLDQALLK RVKRMLKSYH DDFRIDEDGN WMLQSWRGRT VLALSIWVPA

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MDTLLERYDV SMERFNFGSV YPHQNLVNGF KVNHESTNSI FPPTNLDHNS SDSSPYSSAG  60
SDGDSIDPND FNHPMLKLAH YFADGLEARL AGATTPTYSF LVGTQTSTAE ILKGYQVYIS  120
SSPFKLMSNF MANRTIMKLS ENATRLHIID FGISYGFQWP CFIQHLSERT GGPPKLRITA  180
IELPQPGFRP TERVEETARR LKKYAERFNV PFECNVIAQK WETIKFEDLK IDRSELTVVN  240
CMCRLKHIPD ETVMASSPRD IVLKLIKKIN PDVFIHGVVN GTYNAPFFAT RFREALYHYS  300
AFFDIFEATV PREDEMRQLF EKAIHGRDIV NVVACEGLER VERPETYKQW QVRXVRAGFK  360
QLPLDQALLK RVKRMLKSYH DDFRIDEDGN WMLQSWRGRT VLALSIWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-38	69	407	34	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24802	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018507265.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_028945141.1	0.0	uncharacterized protein LOC103447524
Swissprot	Q9XE58	1e-145	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M5W7W5	0.0	M5W7W5_PRUPE; Uncharacterized protein
STRING	XP_008359011.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-147	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	MDP0000287039

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]