PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000286915
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 347aa    MW: 36821.6 Da    PI: 5.2616
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000286915genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.9e-182374256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+G+r ++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+  ++g+
  MDP0000286915 23 RYRGIRKRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 74
                   7********.**********98887..**********************988886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-302382IPR001471AP2/ERF domain
PfamPF008476.9E-122374IPR001471AP2/ERF domain
SMARTSM003803.8E-352388IPR001471AP2/ERF domain
PROSITE profilePS5103224.6712381IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-222382IPR016177DNA-binding domain
CDDcd000183.04E-292383No hitNo description
PRINTSPR003676.3E-112435IPR001471AP2/ERF domain
PRINTSPR003676.3E-114763IPR001471AP2/ERF domain
SuperFamilySSF530981.39E-5133210IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.107.4E-6133208IPR012337Ribonuclease H-like domain
CDDcd062221.55E-12134232No hitNo description
PfamPF134562.0E-11135211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEGKRGPENN NQQKEPKARG QNRYRGIRKR PWGKFAAEIR DPSRNGARLW LGTFETAEEA  60
ARAYDRAAFG FRGHLAILNF PNDYQYHNPS SSLSTLCSSS SSASSSSFSS VDPGRSINFG  120
RGQEEDKVIE FENYVDACWR SDSLRGDIGI VVRDDYSGCI AVRSVRVHAT SVAMAEALAV  180
LEGCVLANNL QLQEVVIESD VQAIIRYLIS PSLSCDWDML PILSRALEEF ISGDVRLRLG  240
CKTTIFARGC FEQGRSFVSS NVKGGVFCMG RWDDAGVLVG DDNDNNCEEN GCASGGGGGG  300
GGNGGGNNDC GSCASNGGWY GCGDGCKGGG GGDKNGGGNG SGGHCVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-272481360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW0UTL60.0W0UTL6_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-27ERF family protein