PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000285955
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family AP2
Protein Properties Length: 476aa    MW: 51524.5 Da    PI: 8.0616
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000285955genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11155192143
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 
                    s y+GV++++++grW+++I+d      + k+++lg f+ta  Aa
  MDP0000285955 155 SEYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAA 192
                    569******************......55**********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-11155220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-12156220IPR001471AP2/ERF domain
PROSITE profilePS5103212.694156220IPR001471AP2/ERF domain
SMARTSM003801.2E-26156226IPR001471AP2/ERF domain
CDDcd000184.47E-21157219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLDLNVNFIT ITETKSMEVE DSGTSNSSVV NAEEALTPSN AGDEDSTNNT TSSFMFDILK  60
REKGGLCNYG AGDQTQSMQF VTRSLFPVTG DGGGGKEGXG YGLGLSSSSS SAARPQGLNL  120
SFAESGEQTQ AELRVVQQKK QPPRKSRRGP RSRSSEYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHS AASSLGFNDF RAYDRAAIKF RGVDADINFN LGDYEEDMKL LGDLNKEEFV  240
HALRRQSTGA SRGNSKYRGV AAAALPKCGA RWEDLMGQVP GNNVFEKKAV KCRTGREAVT  300
NCDPNVYEGE IVLHASIEGS SHNLDLNLGI SQPCSTGKKG XGKFGDFQFP XEKPMVNGFC  360
SAAVGVGQPP HVLTMVAKHP ALYPGFVQKH EEMASGHNRL QPISSPRYTN WAWQVHGNSN  420
NVSPMQVYSI AASSGFPSST ATTPPSATYL PPNLQDGSAS AYNVRRLPFP AASSMY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324360.0GU732436.1 Malus x domestica AP2 domain class transcription factor (AP2D12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354090.20.0ethylene-responsive transcription factor RAP2-7-like
TrEMBLA0A498KNI90.0A0A498KNI9_MALDO; Uncharacterized protein
STRINGXP_008354090.10.0(Malus domestica)
STRINGXP_008369496.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-65related to AP2.7