PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000285475
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 705aa    MW: 81683.3 Da    PI: 7.116
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000285475genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.8e-16124209291
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +Y+eY+++ GF + k++s+k  ++g+    t++C ++g++++++++     ++ ++ + +Cka+l+  +   +kw+v++++l+HnH l+p
  MDP0000285475 124 YYKEYGRQSGFPMIKRSSTKG-DDGKLRYITMCCARSGTSKNTSSN---PLKPYPSIKNDCKAQLRAGLYLGEKWRVNSVKLDHNHGLSP 209
                    8*************9999887.8999**************999888...999***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-13124209IPR004330FAR1 DNA binding domain
PfamPF105514.6E-38329423IPR018289MULE transposase domain
PROSITE profilePS509669.903617653IPR007527Zinc finger, SWIM-type
PfamPF044343.0E-6618649IPR007527Zinc finger, SWIM-type
SMARTSM005751.0E-5628655IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MTLGVEEEPE KLEDTNHVMI ISSPIYEGTG SSSNEFTEED DVVEMSSCNE TESDGVHTIE  60
TCTESTEEDD VIEATFDATE VESNGVHAVE NNEINMENTM DVEEKVQEPQ VGMIFDNADQ  120
VATYYKEYGR QSGFPMIKRS STKGDDGKLR YITMCCARSG TSKNTSSNPL KPYPSIKNDC  180
KAQLRAGLYL GEKWRVNSVK LDHNHGLSPT KTRYWKCFRE VSSLVKKKLE VNDKAGIRVN  240
KSYNSVVVEV GGHENMKCLE KDCRNYIEKV RRLRLREGDA TAVQXYFVSM QGQNANFFYA  300
IDLDKNGRLR NIFWADARSR ATYEEFGDVV TFDTTYLTNK YDMPFAPFVG VNHHRQSILL  360
GCGLISREDN DSFIWLFRTW LACMSGHAPS GIITDQDKAM KKAIEVVFPN TRHRLCLWHI  420
MKKVPDKLKS YKEYESMSSS LDNIVYDSIT SEDFEERGAE MIGKYKFKKQ ARKWLKSLYA  480
ERHHWVPVYV KNKFWAGMST TQRSESMNAF FDGHVNSKTT LKQFLEQYEN ALRSKVLKEA  540
SADSDSFSSN VRCATHYDME KQVQAVYTIS KFKEFQKELT SIMYCDRVSV ETDNAILEYQ  600
IAERILIKEN KKKTVIFKVQ FNEREIEVNC NCCKFEFRGI LCRHALYVLV HHDIDFMPDK  660
YIIRRWRKDV KRCHTRVRIS YSNWVATPEA QRSDMMQKPL MTLRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958052.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A251MR680.0A0A251MR68_PRUPE; Uncharacterized protein
STRINGXP_008381561.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-122FAR1-related sequence 5