PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000285219
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 436aa    MW: 48898.3 Da    PI: 9.8842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000285219genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021244266123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C++ F++   L  H+++H
  MDP0000285219 244 YTCSFCKREFRSAQALGGHMNVH 266
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.92E-6241270No hitNo description
PfamPF139121.8E-6244268IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.24244271IPR007087Zinc finger, C2H2
SMARTSM003550.0038244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MLQLIRESSG KGRPTKPDKL IPYRPTPLAS KGGDARWRKP EPRKETFLGN NRSPKWEPPY  60
TLPDNTAYQQ LMDKLAKLRR MVAXNAQPQA RPLLRITYDK PYLEHIDEQN PFSEESSVQA  120
CPRAMKAVKK ITHGGNPLTS LVGRLNPGNW LELVKGALLK RLSGDYIEEQ DKLLLMATGM  180
STNXFYTKRE KEEMKILRME KKGLVSNSLK DHAGIVTRAI RRSKTTYEED DYNFDGFAWP  240
PRSYTCSFCK REFRSAQALG GHMNVHRKDR ARLKGSPPRD SQYTSTILNL NLNKVPNPNP  300
NFSSTSSASS PSSPSSWISP ISSTLPSLIS PPAPPPVFLV PSSENMKWVV GDTLFNHPLN  360
FKASDFGTTV KKNAESFCGV GDRQCDGFIG EEHGCIKTVK AADHPHHPIV RLDLEIGMLG  420
DSNKEDLDLE LRLGYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-14239266229superman protein
2l1o_A6e-14239266229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4184720.0HQ418472.1 Malus x domestica transcriptional regulator superman (SUP13a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288050.11e-176transcriptional regulator SUPERMAN-like
TrEMBLA0A498I9Q71e-176A0A498I9Q7_MALDO; Uncharacterized protein
STRINGXP_008391176.11e-175(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-21C2H2 family protein