PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000284679 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 638aa MW: 70706.5 Da PI: 5.2547 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 438 | 6.8e-134 | 168 | 536 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +e+L +cA+a++++d++ +++l++ l++++s +g+p+qRl ay++e+L arla+s+s+++++l+++e + s+e l+++++++ev+P++kf+++ MDP0000284679 168 TEVLCACAKALANNDMSTTEWLISILRQMVSVSGEPIQRLGAYILEGLIARLASSGSSICASLRCKEPA---SAELLSYMHILYEVCPYFKFGYMS 260 689*****************************************************************9...9*********************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 aN aI ea++ e+rvHiiDf++ qG+QW++L+qaLa+Rp+gpp++RiTg+++++s + l +g+rL+++Ae+++vpfef++ + ++++l MDP0000284679 261 ANGAIAEAMKDESRVHIIDFQVAQGTQWITLIQALATRPGGPPQIRITGIDDSASAyvRGGGLGVVGQRLSRLAESCKVPFEFHA-AGIFGSEVQL 355 ****************************************************888899999************************.78899***** PP GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 e+L+++pgEa+aVn++++lh+++desvs++++rd++L+l kslsPkvv++veqe+++n+++Fl rf+++l+y+ a+fds+++ lpre++eri+vE+ MDP0000284679 356 EDLEIRPGEAIAVNFAFMLHHMPDESVSSHNHRDRLLRLAKSLSPKVVTLVEQESNTNTAPFLPRFIDTLSYFRAVFDSIDVALPREHRERINVEQ 451 ************************************************************************************************ PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++l+reivn++acegaer+er e l+kWr+r+ +aGF+p++ls+++++++k+ll+ ++++ y++ee +g+l+lgW+++pLv+ +aW MDP0000284679 452 HCLAREIVNIIACEGAERVERYEPLSKWRSRFIMAGFSPYQLSSFVNATIKTLLQSYSEK-YTLEEIDGALYLGWMNKPLVASCAW 536 **********************************************************65.************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.115 | 141 | 518 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-131 | 168 | 536 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 638 aa Download sequence Send to blast |
MQESYKHVIP NVSHPFGEQP VEEPESYCWP SFQNADHQAS SDEVVQGTKL SVQRFEQHCX 60 LESSSGTSAY PGRSSASSLN FSGNGSPASH PDLHSYQSGG SPVNQSCMSN DTDDLXHKMR 120 ELENALLGND SDAFDVYDII DEXXXNQXYS EAEDREQMML MISRGDLTEV LCACAKALAN 180 NDMSTTEWLI SILRQMVSVS GEPIQRLGAY ILEGLIARLA SSGSSICASL RCKEPASAEL 240 LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DESRVHIIDF QVAQGTQWIT LIQALATRPG 300 GPPQIRITGI DDSASAYVRG GGLGVVGQRL SRLAESCKVP FEFHAAGIFG SEVQLEDLEI 360 RPGEAIAVNF AFMLHHMPDE SVSSHNHRDR LLRLAKSLSP KVVTLVEQES NTNTAPFLPR 420 FIDTLSYFRA VFDSIDVALP REHRERINVE QHCLAREIVN IIACEGAERV ERYEPLSKWR 480 SRFIMAGFSP YQLSSFVNAT IKTLLQSYSE KYTLEEIDGA LYLGWMNKPL VASCAWSPIY 540 VLPPCDGXGV VAEVLATCTQ LNVILHSTFC VKSSDTRFNS PLRQAIVVPL PYNLNSSFPS 600 TVLLRCLVNS LFGXLHHFSX LLKRFYGVPH PQDGFXAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-64 | 167 | 536 | 4 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.24951 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008368529.2 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_008368530.2 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_017186908.2 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8H125 | 0.0 | SCL5_ARATH; Scarecrow-like protein 5 | ||||
TrEMBL | A0A498KD23 | 0.0 | A0A498KD23_MALDO; Uncharacterized protein | ||||
STRING | XP_008342206.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008368529.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1653 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G50600.1 | 0.0 | scarecrow-like 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000284679 |
Publications ? help Back to Top | |||
---|---|---|---|
|