PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000284409

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 431aa MW: 47835.8 Da PI: 8.339

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000284409	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.5	3.1e-45	264	363	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la MDP0000284409 264 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAI 359 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000284409 360 AQAE 363 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.201	263	364	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-44	264	361	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MECENDIKVF HKSTERQRVY VFLGGLXDMF DQVRGEVLRX DPPLGLQXSY AYVRREADRX 60 EAMKIEVEKS XPAXMXAKAR GSSSWSNKDG SQNRPXPTRP SQTSRDRPQG DQQQPANQHI 120 VQPTGPTGVR LERYMQDQPS GHTGFGLESE LQPTVFDXTE PQQHTSVNST EXQLSQNASP 180 NVIXGXSMDS SSVNSYNQSS STPDAPXLRR LPXRRIHSNL IFRSISLQAI SASCGRSARG 240 TPRTSRTAEK MESQSGRKQG STSPCAACKL LRRRCAQDCV FAPYFPADEP QKFASVHKVF 300 GASNVNKMLQ ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAIA 360 QAEVVHMRMG QFAITTTTAS TTTCSPDQKM APDNSHHHHH HRSHQTATTK SFFSMDMAAD 420 QANMGESLWS C

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MECENDIKVF HKSTERQRVY VFLGGLXDMF DQVRGEVLRX DPPLGLQXSY AYVRREADRX  60
EAMKIEVEKS XPAXMXAKAR GSSSWSNKDG SQNRPXPTRP SQTSRDRPQG DQQQPANQHI  120
VQPTGPTGVR LERYMQDQPS GHTGFGLESE LQPTVFDXTE PQQHTSVNST EXQLSQNASP  180
NVIXGXSMDS SSVNSYNQSS STPDAPXLRR LPXRRIHSNL IFRSISLQAI SASCGRSARG  240
TPRTSRTAEK MESQSGRKQG STSPCAACKL LRRRCAQDCV FAPYFPADEP QKFASVHKVF  300
GASNVNKMLQ ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DALQTQLAIA  360
QAEVVHMRMG QFAITTTTAS TTTCSPDQKM APDNSHHHHH HRSHQTATTK SFFSMDMAAD  420
QANMGESLWS C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-46	260	383	7	130	LOB family transfactor Ramosa2.1
5ly0_B	7e-46	260	383	7	130	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-68	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	MDP0000284409