PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000283274
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 769aa    MW: 84864.4 Da    PI: 7.9529
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000283274genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.81.9e-13135219292
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                    +k++++s+v+   +l l  +f+++h  +    ++  + l de+g ++   +  rk++    l++GWk+F+ a++L +gD +vF+l++ ++f++
  MDP0000283274 135 VKTMLQSHVTGGFWLGLQVSFCKNHlpK----GDEVMXLIDEDGDEYPTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTFKP 219
                    699*******************888443....44589**************656665....************************98777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-15127218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-18127217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-20132218No hitNo description
PROSITE profilePS508639.657134225IPR003340B3 DNA binding domain
SMARTSM010191.3E-17134225IPR003340B3 DNA binding domain
PfamPF023626.1E-11135219IPR003340B3 DNA binding domain
SMARTSM003321.3E-52361631IPR001932PPM-type phosphatase domain
PROSITE profilePS5174634.339364633IPR001932PPM-type phosphatase domain
SuperFamilySSF816063.27E-49378633IPR001932PPM-type phosphatase domain
Gene3DG3DSA:3.60.40.101.1E-53378638IPR001932PPM-type phosphatase domain
CDDcd001432.31E-54379633No hitNo description
SMARTSM003310.0011386633IPR001932PPM-type phosphatase domain
PfamPF004812.5E-29397611IPR001932PPM-type phosphatase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MVTAKSKLSY EESRQQRLEE NKKRMEALNL PMLAQALNKT PNSPKPSPMK RAGKPRTYEV  60
QMVEVRRSTR VANRPAPDYK EVVAERVMIP RRSYXTNRHR DVANRVYASD EARAAAMVKA  120
DELEASLGSD HPTLVKTMLQ SHVTGGFWLG LQVSFCKNHL PKGDEVMXLI DEDGDEYPTI  180
YLARKTGLSG GWKGFAVAHD LVDGDALVFQ LIRPTTFKPA KKKXQINRXC LCXRVTCVND  240
GAVIVCSRIH XTKPNEPLES QAAQAFEPII INKKGKEKNS FISFVLFHLI IRSLEREWNF  300
RSAPVSAFLD HSNPPPPSFP SRLALVSFAR NRHCCLLIGP SLPRENHQTV PLSVLLKREL  360
ANEKIERPEI IHGQASQSKK GEDFTLVKTE CQRIVGDGVS TYSVFGLFDG HNGSAAAIYS  420
KENLLTNVLA AIPSDLNRDE WVAALPRAFV AGFVKTDKEF QERSQTSGTT VTFVIIEGWV  480
ISVASVGDSR CIVEPAEGGV YYLSADHRLE INEEERQRIT SSGGEVGRLN TGGGAEIGPL  540
RCWPGGLCLS RSIGDMDVGE FIVPVPYVKQ IKLSTAGGRL IISSDGVWDA LSAEEALDCC  600
RGMPPDAAAA QIVKDAVGHK GLRDDTTCIV IDILPQEKPQ ASLPQPKRQG KGVLFKSMFK  660
KKSSESSSSV EKEYIEPDEV EELFEEGSAS LSERLDTKYP LCNMFKLFMC AVCQVEIKPG  720
EGISIHAGSS NPGKLRPWDG PFLCSSCQGK KEAMEGKRPS GRRHDSDSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jrq_A4e-2134263815324Protein phosphatase 2C 56
3nmn_B3e-2139763850312Protein phosphatase 2C 56
3nmn_D3e-2139763850312Protein phosphatase 2C 56
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.50430.0fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9628232e-52AY962823.1 Prunus armeniaca protein phosphatase 2C-related mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008361008.20.0probable protein phosphatase 2C 12
RefseqXP_017184858.20.0probable protein phosphatase 2C 12
SwissprotQ9FX080.0P2C12_ARATH; Probable protein phosphatase 2C 12
TrEMBLA0A498HMQ70.0A0A498HMQ7_MALDO; Uncharacterized protein
STRINGXP_008393818.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-68B3 family protein
Publications ? help Back to Top
  1. Schweighofer A,Hirt H,Meskiene I
    Plant PP2C phosphatases: emerging functions in stress signaling.
    Trends Plant Sci., 2004. 9(5): p. 236-43
    [PMID:15130549]
  2. Xue T, et al.
    Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis.
    BMC Genomics, 2008. 9: p. 550
    [PMID:19021904]
  3. Fan L, et al.
    Dynamic analysis of Arabidopsis AP2 σ subunit reveals a key role in clathrin-mediated endocytosis and plant development.
    Development, 2013. 140(18): p. 3826-37
    [PMID:23924631]