PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000283079
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 517aa    MW: 55909.5 Da    PI: 7.8263
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000283079genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-16224259134
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++Cgt +  Tp++Rrgpdg++tLCnaCGl+++ kg
  MDP0000283079 224 CRHCGTNEkcTPMMRRGPDGPRTLCNACGLMWANKG 259
                    ********************************9987 PP
2AP262.11.2e-19420470155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +g+ G+r+++ +g+W+AeIrdp+    + kr +lg+f+taeeAa+a+++a + l+g
  MDP0000283079 420 KGFVGIRQRP-WGKWAAEIRDPN----QgKRLWLGTFDTAEEAAAAYDRASLMLRG 470
                    5899******.**********93....24*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.4E-1080115IPR010399Tify domain
PROSITE profilePS5132014.05180115IPR010399Tify domain
PfamPF062001.5E-1185114IPR010399Tify domain
PfamPF062035.7E-15148190IPR010402CCT domain
PROSITE profilePS5101713.225148190IPR010402CCT domain
SMARTSM004013.2E-9218272IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-10221263No hitNo description
CDDcd002026.09E-13223266No hitNo description
Gene3DG3DSA:3.30.50.103.4E-13223260IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
PfamPF003205.6E-14224259IPR000679Zinc finger, GATA-type
CDDcd000184.33E-33420478No hitNo description
PROSITE profilePS5103223.051421478IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-22421478IPR016177DNA-binding domain
SMARTSM003801.7E-34421484IPR001471AP2/ERF domain
PfamPF008477.0E-13421470IPR001471AP2/ERF domain
PRINTSPR003672.8E-9422433IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-29422478IPR001471AP2/ERF domain
PRINTSPR003672.8E-9444460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDDISGSNAS MHMSDEVHLQ YMQEHEHPQG LXQMSNGNGV ADDHDDGSGA GTGGAELSEV  60
NVQSEPVNLS DXXSGMVDHS GNNGDQLTLS FQGQVFVFDS VSPEKVQAVL LLLGGREVPP  120
GMXAXPLTTQ HDNRALTSIP QRLSVPQRLA SLIRFREKRK ERNFDKKIRY TVRKEVALRM  180
QRKKGQFTSS KPNSDDSASA ITSWGSNENW GQDGNGSIPQ EAVCRHCGTN EKCTPMMRRG  240
PDGPRTLCNA CGLMWANKGI SMSDSNSPSP ACLLLFYYLS FFPPSILHLS HHQIPNSIPP  300
PSNSMSTVQI NRSAANSDVR FSKQTTALAK PVIRETPNPP RNPRIQPKLV RIIHADADAT  360
DSSSDDNEDS VVPTVKRRVR EINLEVSSPS SASSSPPCSG RPKLSKRXKL QPKSGPDRRK  420
GFVGIRQRPW GKWAAEIRDP NQGKRLWLGT FDTAEEAAAA YDRASLMLRG PRAVTNFPGA  480
XETVVADEVV AAAEXGHGEG GGAVAAVGGG EGAADCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20420478160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302320.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324270.0GU732427.1 Malus x domestica AP2 domain class transcription factor (AP2D3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964031.10.0GATA transcription factor 28-like
RefseqXP_028964032.10.0GATA transcription factor 28-like
RefseqXP_028964033.10.0GATA transcription factor 28-like
RefseqXP_028964034.10.0GATA transcription factor 28-like
SwissprotQ8GXL71e-101GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A498J0270.0A0A498J027_MALDO; Uncharacterized protein
STRINGXP_008358019.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-104ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]