PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000282021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 452aa MW: 49752.4 Da PI: 11.1942 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.9 | 9.5e-38 | 263 | 322 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ cprC+s+ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k++ MDP0000282021 263 NQQPHGCPRCQSMNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKMKRA 322 578889**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47473 | 5.3E-10 | 3 | 55 | IPR011992 | EF-hand domain pair |
Gene3D | G3DSA:1.10.238.10 | 2.7E-13 | 4 | 55 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 10.971 | 8 | 43 | IPR002048 | EF-hand domain |
SMART | SM00054 | 0.0021 | 12 | 40 | IPR002048 | EF-hand domain |
CDD | cd00051 | 7.86E-7 | 14 | 55 | No hit | No description |
PROSITE pattern | PS00018 | 0 | 21 | 33 | IPR018247 | EF-Hand 1, calcium-binding site |
ProDom | PD007478 | 5.0E-23 | 264 | 316 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.9E-33 | 265 | 321 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.453 | 267 | 321 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 269 | 305 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 452 aa Download sequence Send to blast |
MGKDLSDDQV SSMKEACTLF DTDNDGKIAP SELGILMRSL GGNPTQAQLK SIVAEEKLTA 60 PLRLPSLPRP HGQAHEARAL RSPAPRRLQG PRQGLNRLRV RVGAPAHPHQ HRREIGAVRV 120 RRVDPGGGCR VRWQDQIRGL HCQNGGQVRD VTATLASARP GGHGAQIVEQ IPQISVRMVP 180 ESSTAKARKP IMELDRLERV QSVQSRVGRR RFRFRAEPGR DFTSIVGFEA SKLANLLHLL 240 PGRLPGRGQQ NQDQRLKAAE QQNQQPHGCP RCQSMNTKFC YYNNYSLSQP RYFCKACRRY 300 WTQGGTLRNV PVGGGCRKMK RAKGGSSSAS ASRTVQPQPS QKEQDMQNTL GIGGDSVGMS 360 TENPSGGLAV HHQYYPGASH GYLSSLAGLQ SLNQSQPFNV GGGHDPASNM SLLQGFNLPA 420 PAWNGQMVQS QPQQQRSERR RMVDQKFLMV PI |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.15695 | 1e-61 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-28 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000282021 |