PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281965
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 437aa    MW: 49087.1 Da    PI: 9.8716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281965genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.45.2e-27289342355
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 
                    D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++ +tYe+ 
  MDP0000281965 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLMVTYEDA 342
                    99***********************9988**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819951.88E-5127181No hitNo description
PfamPF105331.6E-17239285IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.5E-28275342IPR003657WRKY domain
PROSITE profilePS5081125.672282345IPR003657WRKY domain
SuperFamilySSF1182907.06E-23285341IPR003657WRKY domain
SMARTSM007741.6E-30287347IPR003657WRKY domain
PfamPF031062.7E-22289341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEEVEEANKT AVESCHRVLS LLSQPQEQVQ YRNLTVETGK AVSRFKKVVS ILNTGLGHAR  60
VRKLKKLQIP FPERILLDNP ISIADRPSKT PHFLQSSFPE NPTQDLSLDV KSALCLGNPS  120
LELSTNGKTP IHPAQQVPPA QYHLLQQQRQ HQQHQQQQQL QQRMLLQQHQ MKQQTEMMYR  180
RSNSGINLNF DSSSCTPTMS STRSFISSLS IDGSVANFDG NSFHLIGAPL SSDQNSQHKR  240
KCSARGDDGS VKCGGSSGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD YSWRKYGQKP  300
IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLMVTYE DAPVHIFGWF KHDIQIGAAI  360
SALGSWALSS VFAFRQAGMK QSVQQSILHI SPCVHALIPF ITRREDIIVY IIFWPCYSTM  420
TALTCSCGER PDQRATA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-162833401066WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.136730.0bud| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280998.10.0probable WRKY transcription factor 21
RefseqXP_008382939.10.0probable WRKY transcription factor 21 isoform X1
RefseqXP_017190216.10.0probable WRKY transcription factor 21 isoform X1
SwissprotO043361e-115WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A498IXS80.0A0A498IXS8_MALDO; Uncharacterized protein
STRINGXP_008382938.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-107WRKY DNA-binding protein 21