PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281804
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 1105aa    MW: 125112 Da    PI: 7.1732
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281804genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26035.52.8e-119861051160
         DUF260    1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeere.damss 60  
                     +C+ C+vlr++C++ C+l+ ++     p++q + + +++k+F+ + +l+++  +pe++r+  a++s
  MDP0000281804  986 SCNXCRVLRKGCSDTCILRSCLywidsPEAQGNXTLFLAKFFSHNDLLSFVXVVPENQRPvSAVRS 1051
                     6*********************************************************85155666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115313.17368220IPR008808Powdery mildew resistance protein, RPW8 domain
PfamPF056593.4E-2874202IPR008808Powdery mildew resistance protein, RPW8 domain
SuperFamilySSF525406.48E-37225489IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.0E-34242508IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3003.5E-8243365IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003641.4E-12257272No hitNo description
PRINTSPR003641.4E-12334348No hitNo description
PRINTSPR003641.4E-12422436No hitNo description
SuperFamilySSF520474.16E-10530694No hitNo description
Gene3DG3DSA:3.80.10.101.2E-5554676IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.4E-12655671No hitNo description
PfamPF031954.7E-89861051IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MVMQLLLKLT LSNSEISMEL QEKAAKMVRN QISNSQFSSK SNIGDILFRN WVKNDHFGQF  60
SCTFNQGMSG AGGLIGGAAL GTAFNVLYDV LNELITKNVI FKPLLKDIKS RLDSLAPLLK  120
DIEKSNKKXD LSDKELGNLK VHLEEGVKVV QKCKKVXWWS LYKRYKYANK LIEWDESLQR  180
LLEILNVQGI RDMKDSSLSV RNIENVLSRI ESNMVIPKQP DSEAWCAVPQ LPPLVVGLDF  240
PLKELKMKLX KDKNVSMVVL TAPGGCGKTT LATKFCQDKD IKDTFKDNIF FVTVSKKPKL  300
ENIVQDLYQR KGFPASTFEN EVSAVMLLQR FLKEEGQNPF LIVLDDVWSG SESLVEKFDQ  360
FKTENHKXLV TSRSEFRGYG FPCHLQSLDH DNAMKLFHHS ASLGDKSSHI PKDLPEKIVE  420
RCKGFPLAIT VVGKSLCGKP IEIWQKRVIE WSKGFSILDS ETELLLCLER SLDALDKEMV  480
GIKECFLDLG SFPEDQRIPA AALIDIWAEL YDVDTDIKCI ANLYELTTRS LANLVVTSCY  540
FADEXFSTKW HDMQMPEVEV LVLNFQTKNY ALPESVVNMD ELKVVIVTNY GFLPAELSNF  600
QLLSXLPNLR RIRLERISIP SITKNLIQLA SLKKISLFMC NIGQAFNNCS NQISSAFPNL  660
EEMNIDYCSD LIELPAEELP XSVVDLEQLE EVVCDEETKY LWESFLSCLN NWXLXKLDXA  720
IFRIKAAGQE EKPEAITLLR YQSALRNXTD KVSFPVIVAV XHARTKMVPA TRKAQQFLPF  780
FRKNVXNWHR RMVEVFSSRL SRHSISARRH KDTEVPESDL YKKSRNLLVK NVLGTTCLHV  840
DTEVPKSDLY RKGGXGGARK LTSLHYDICT LTPGPAQAQC RWQTIPKGNN NRIIMRKLIF  900
FLSTVGLVED GNXSVVLNFR SPPXSVVANR RSLPPXLGEG EGLDLGESAD SRDAEAEVEG  960
DDGLQDLTQD MHTEVVPVLD RMVEMSCNXC RVLRKGCSDT CILRSCLYWI DSPEAQGNXT  1020
LFLAKFFSHN DLLSFVXVVP ENQRPVSAVR SVRPHGEPGE RSGGASVEWE LARVPVGGRY  1080
GAVQRRFEAI TGFYYACLRR VFERV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-14235507160440Disease resistance RPP13-like protein 4
6j5t_F1e-14235507160440Disease resistance RPP13-like protein 4
6j5t_G1e-14235507160440Disease resistance RPP13-like protein 4
6j5t_L1e-14235507160440Disease resistance RPP13-like protein 4
6j5t_O1e-14235507160440Disease resistance RPP13-like protein 4
6j5u_A1e-14235507160440Disease resistance RPP13-like protein 4
6j5v_A1e-14235507160440Disease resistance RPP13-like protein 4
6j5w_A1e-14235507160440Disease resistance RPP13-like protein 4
6j6i_C1e-14235507160440Disease resistance RPP13-like protein 4
6j6i_F1e-14235507160440Disease resistance RPP13-like protein 4
6j6i_G1e-14235507160440Disease resistance RPP13-like protein 4
6j6i_L1e-14235507160440Disease resistance RPP13-like protein 4
6j6i_O1e-14235507160440Disease resistance RPP13-like protein 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.165610.0cell culture| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947543.10.0probable disease resistance protein At5g66900
TrEMBLA0A251NB820.0A0A251NB82_PRUPE; Uncharacterized protein
STRINGXP_009366573.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-23LOB domain-containing protein 38