PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000281062
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 139aa    MW: 16185.5 Da    PI: 9.8588
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000281062genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-085080132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     r rWT+ E+ ++++a k++G   W +I ++++
    MDP0000281062 50 RERWTEGEHNKFLEALKLYGRA-WQRIEERIN 80
                     78******************88.****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-63980IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-94894IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.5E-55078IPR009057Homeodomain-like
PfamPF002493.3E-65082IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGLAWAKLCA ARGIFWSVEN XLYRLVMDTH SSGEDFLVKA RKPYSTTKQR ERWTEGEHNK  60
FLEALKLYGR AWQRIEERIN AASIYPSATA AYLQGMHIDF TSHIVKVFLA LKCFQAVGAE  120
YGKRFLRLLD LLDLSRFMW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9I3T04e-25A0A2N9I3T0_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.46e-26MYB_related family protein