PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000280307
Common NameKNAP1
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 398aa    MW: 45171.9 Da    PI: 6.4686
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000280307genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-093253602055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  MDP0000280307 325 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 360
                    4679*****************************885 PP
2ELK37.84.2e-13280301122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++LlrKYsgyL+sLkqE+s
  MDP0000280307 280 ELKNHLLRKYSGYLSSLKQELS 301
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-20131175IPR005540KNOX1
PfamPF037905.7E-21132174IPR005540KNOX1
SMARTSM012562.9E-28182233IPR005541KNOX2
PfamPF037916.0E-24186231IPR005541KNOX2
PfamPF037892.8E-10280301IPR005539ELK domain
SMARTSM011883.5E-7280301IPR005539ELK domain
PROSITE profilePS5121311.296280300IPR005539ELK domain
PROSITE profilePS5007113.086300363IPR001356Homeobox domain
SuperFamilySSF466898.13E-20301375IPR009057Homeodomain-like
SMARTSM003892.4E-13302367IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27305366IPR009057Homeodomain-like
CDDcd000867.83E-12312364No hitNo description
PfamPF059201.2E-16320359IPR008422Homeobox KN domain
PROSITE patternPS000270338361IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEDYNNQMDH ESSGGRGNFL YASPNLGGNY GRAASDHQMG INTFHLQSSG GGGGGGSGDQ  60
CNFQSPGTHP INVKTEATTS QHGHPKFQYN NNNNNHHLVS SSRGHQPVVH QLQHNLDLQN  120
DDHSLSSNEV EAIKAKIIAH PQYSNLVEAY MDCQRVGAPS DVVPRLSVAR QEFEARQRSS  180
GTSRETSKDP ELDQFMEAYY DMLVKYREEL TRPIQEAMDF MRRIETQLNM LGNNNNAPPL  240
RIFSPSEDKC EGIGSSEDEQ ENSGGETEVP EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL  300
SKKKKKGKLP KEARQKLLSW WELHYKWPYP SESEKVALAE STGLDQKQIN NWFINQRKRH  360
WKPSEDMQFM VMDGLHPQNA ALYMDGHYTG DVHYRLGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29160.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed only in the stems.
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZ719780.0Z71978.1 M.domestica mRNA for kn1-like protein (1759 bp).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001298100.10.0homeobox protein knotted-1-like 1
SwissprotO041340.0KNAP1_MALDO; Homeobox protein knotted-1-like 1
TrEMBLA0A498J6X50.0A0A498J6X5_MALDO; Uncharacterized protein
STRINGXP_008347590.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-138KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Watillon B,Kettmann R,Boxus P,Burny A
    Knotted1-like homeobox genes are expressed during apple tree (Malus domestica [L.] Borkh) growth and development.
    Plant Mol. Biol., 1997. 33(4): p. 757-63
    [PMID:9132068]