PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000280252

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 335aa MW: 34916.5 Da PI: 5.6744

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000280252	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.2	2.6e-33	60	165	3	105
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg... 88 ++++++++hTkv+gR+RR+R++a+caar+F+L+ eLG +d++t+ WLl+ a++ai+e+tgt++ +a ++ + +s+ + MDP0000280252 60 IRRSSTKDRHTKVEGRGRRIRVPATCAARIFQLTXELGNESDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggslkI------PTTAST-Sved 148 5899***********************************************************8888855543222221......111111.1111 PP TCP 89 .kaaksaakskksqksaa 105 ++ +s+ ++k+++ s++ MDP0000280252 149 nSSPPSS-TKKQKRPSNS 165 1111122.2222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.7E-27	64	163	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	23.432	65	119	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MTSYLEDQDD DGGASDLSTS TGDLGDNDHT NRDGVAYPIG MVPVAMPMPM SVPSTVSTLI 60 RRSSTKDRHT KVEGRGRRIR VPATCAARIF QLTXELGNES DGETVRWLLE HAEQAIIEAT 120 GTGTVPAIAV SVGGSLKIPT TASTSVEDNS SPPSSTKKQK RPSNSEFLDV ENDAVSQSSG 180 LAPVGPSVPQ GLVPVWAVGG PGLMVPANAL WIGPIWALPP TMTPVFNMAG AARPISSFVA 240 NRGGGGLGVL DVRAPSPPLS NSAANTSTVG PRAAMRSSTT MAPSVSSSSN NSNGTGSGAT 300 TKTQMLRDFS LEIYDKXELQ FMGRPVGPEN HHQTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009362837.1	0.0	PREDICTED: transcription factor TCP9-like
TrEMBL	A0A498K0T3	1e-175	A0A498K0T3_MALDO; Uncharacterized protein
STRING	XP_008374020.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-58	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000280252