PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000280009
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29862 Da    PI: 8.7845
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000280009genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.22.9e-30959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtf+kRr+g+lKKA+ELSvLCdaeva+i+fs++gkl e+ss
  MDP0000280009  9 KRIENKINRQVTFAKRRKGLLKKAYELSVLCDAEVALIVFSTRGKLSEFSS 59
                   79***********************************************96 PP
2K-box91.81.2e-3011319716100
          K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    s +q++ kLk ++e Lqr+qRh+lGedL  L + eLqqLe+qL+ slkkiRs+K+++++ qi+elq+ke++l e+n+ Lr+klee
  MDP0000280009 113 SRYQDYLKLKTKVEALQRTQRHFLGEDLVHLGMTELQQLENQLDMSLKKIRSTKTQFMHVQISELQRKEEMLLEANTGLRRKLEE 197
                    5689******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-32278IPR002100Transcription factor, MADS-box
CDDcd002656.39E-42278No hitNo description
PRINTSPR004044.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129715.216111201IPR002487Transcription factor, K-box
PfamPF014861.9E-27114195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRKGLLK KAYELSVLCD AEVALIVFST RGKLSEFSSG  60
PSMAKTLERY QRCTYGELGA SQSAEDEQVA DSFSFVISFK MDTSITCNDI SLSRYQDYLK  120
LKTKVEALQR TQRHFLGEDL VHLGMTELQQ LENQLDMSLK KIRSTKTQFM HVQISELQRK  180
EEMLLEANTG LRRKLEESTA DLQRSWNSHH QAAQLEGFPE HLQFNNTLQI GYSTPAVTND  240
EVNVATSSEQ SRRGFIPGWM L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-2211019516101Developmental protein SEPALLATA 3
4ox0_B3e-2211019516101Developmental protein SEPALLATA 3
4ox0_C3e-2211019516101Developmental protein SEPALLATA 3
4ox0_D3e-2211019516101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.29571e-171bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankMDU789501e-168U78950.1 Malus domestica MADS-box protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951646.10.0MADS-box protein CMB1-like isoform X1
RefseqXP_028951647.10.0MADS-box protein CMB1-like isoform X1
SwissprotQ8LLR22e-90MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A498HEX61e-162A0A498HEX6_MALDO; Uncharacterized protein
STRINGXP_009356441.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.18e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]