PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000279733
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 195aa    MW: 22196.1 Da    PI: 6.7956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000279733genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18754253
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                   +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  MDP0000279733  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLM 54
                   69******9.**********8.....334*********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.20E-34666No hitNo description
PfamPF008472.6E-11756IPR001471AP2/ERF domain
SMARTSM003801.0E-39770IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.035764IPR001471AP2/ERF domain
PRINTSPR003673.2E-11819IPR001471AP2/ERF domain
PRINTSPR003673.2E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MARSQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGLKAR  60
TNFPYNPNEP MSHSSTLLSA ALMAKLHKCN MASLQMAKTT KPSVPKEEPQ EQVHMPLPST  120
TWITGKGGEK VRDYSGAEQW VDHGSWVGGD LQGVPHDHHH HQQEFIKPLE DDHIEQMIEE  180
LLDYGYIEIC PGVSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17868667ATERF1
3gcc_A6e-17868667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375424.11e-146ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A498HHL01e-145A0A498HHL0_MALDO; Uncharacterized protein
STRINGXP_008375424.11e-146(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]