PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000279028
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 331aa    MW: 36084.4 Da    PI: 9.7396
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000279028genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.81.5e-32158214158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k+rkpylheSRh hAlrR+Rg+gGrF
  MDP0000279028 158 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKARKPYLHESRHLHALRRARGCGGRF 214
                    69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.9E-38156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.512157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-27159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDIAKIVVVI GRSERNTMSR CLVKLKGKCH ACKRLHLNSQ RPANCYACDF LPVASANAKE  60
GSNSMVMNGA MQAQPNARLD GGXANFHKEL RTTVGSQSDG NNGSENEHIK SVSSSVVPAL  120
GEHVDPNSQM ELVGHSILPP HFYGMHPGRM PLPLDMEEEP VYVNAKQYHG ILRRRQSRAK  180
AELEKKLIKA RKPYLHESRH LHALRRARGC GGRFLNTKKQ DANDENSSLE KGMNLDGNHS  240
AQSASNVQQD GSGPWFRTHD HHTHSNGNGN DHGPSSAYPS TFGDSRENMQ LKGLSRGAIP  300
SEAQGVHGVS WGKPGCAMSL SGKSFLALVT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21158222266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164124e-95fruit| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960856.11e-169nuclear transcription factor Y subunit A-4-like
TrEMBLA0A498JKA61e-180A0A498JKA6_MALDO; Uncharacterized protein
STRINGXP_008346932.11e-170(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.13e-33nuclear factor Y, subunit A7