PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000278681
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 440aa    MW: 48854 Da    PI: 7.126
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000278681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1765112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
    MDP0000278681  65 KGPWTPEEDQKLLAYIEEHGHGSWRALPTKAGLQRCGKSCRLRWTNYL 112
                      79********************************************97 PP
2Myb_DNA-binding52.61e-16118163148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
    MDP0000278681 118 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 163
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2556115IPR009057Homeodomain-like
PROSITE profilePS5129418.01560112IPR017930Myb domain
SuperFamilySSF466892.13E-3062159IPR009057Homeodomain-like
SMARTSM007174.0E-1464114IPR001005SANT/Myb domain
PfamPF002492.2E-1665112IPR001005SANT/Myb domain
CDDcd001674.70E-1167112No hitNo description
PROSITE profilePS5129425.891113167IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-26116167IPR009057Homeodomain-like
SMARTSM007171.2E-16117165IPR001005SANT/Myb domain
PfamPF002495.5E-16118163IPR001005SANT/Myb domain
CDDcd001673.12E-11120163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MALDLQTLTE CLKYLRGCRY FHRSIRKSRI DMERGRGGEI KTSSYVDENI PMGRSPCCDK  60
VGLKKGPWTP EEDQKLLAYI EEHGHGSWRA LPTKAGLQRC GKSCRLRWTN YLRPDIKRGK  120
FSLQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLAKM GIDPVTHKPK  180
KDNLLSSVDG QSKNASNLSH MAQWESARLE AEARLVRESR LRSQSSSLLH QLTTTNPNTY  240
VPVNSSSSGS TSAQLQLKWP SSKHSHNSVD LESPTSTLTY NSDQINVNXA SSSAMGAAIM  300
QPAMIEFVGS SGSSETKEEG GDNEQDWKSH LSFTPLGLVH DHHQNISMSM EAAGAWTTND  360
HQVGNVAGDM EAADQEGFTN LLLNNSDEVQ SLSDGDRGVD SDNGGGSGSG RGSDYYEDNK  420
HYWNSILNLV NSSPSESPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25631675108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119390.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963652.10.0transcription factor MYB16-like
SwissprotQ9LXF11e-128MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A498J4G10.0A0A498J4G1_MALDO; Uncharacterized protein
STRINGXP_008365407.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-112myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]