PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000277239

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 130aa MW: 14936.3 Da PI: 10.0443

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000277239	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.1	1.1e-41	15	105	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg ++ ++++l++ k MDP0000277239 15 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGQFRLYNNKLMCFK 105 7**********************************************************************************99998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.462	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-41	15	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MKENGSSRKQ GAPSPCAACK LLRRRCAQDC VFAPYFPADE PQKFANVHKV FGASNVNKML 60 QELPEHQRGD AVSSMVYEAN ARVRDPVYGC VGQFRLYNNK LMCFKPNWLW LRQRWCTSKC 120 VRPHHSRTMG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	11	101	7	97	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	11	101	7	97	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.11462	0.0	cell culture\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008359794.2	9e-64	LOB domain-containing protein 4-like
Refseq	XP_009353911.1	8e-64	PREDICTED: LOB domain-containing protein 4
Refseq	XP_009371914.1	1e-63	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-56	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A498JUR4	2e-61	A0A498JUR4_MALDO; Uncharacterized protein
STRING	XP_009353911.1	3e-63	(Pyrus x bretschneideri)
STRING	XP_009371914.1	4e-63	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-59	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	MDP0000277239