PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000277077

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NF-YB

Protein Properties

Length: 1449aa MW: 163789 Da PI: 6.093

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000277077	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	174.6	1e-54	866	961	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrkting+d++wa++tlGfedyv+plk yl+kyr+legek MDP0000277077 866 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGEDIIWAITTLGFEDYVHPLKSYLHKYRDLEGEK 961 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03141	4.9E-225	299	804	IPR004159	Putative S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	1.61E-23	322	543	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	4.9E-20	371	537	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	3.90E-4	417	512	No hit	No description
SuperFamily	SSF53335	8.69E-12	624	793	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:1.10.20.10	3.3E-52	859	985	IPR009072	Histone-fold
SuperFamily	SSF47113	3.42E-39	868	989	IPR009072	Histone-fold
Pfam	PF00808	3.3E-27	871	935	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-17	899	917	No hit	No description
PROSITE pattern	PS00685	0	902	918	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-17	918	936	No hit	No description
PRINTS	PR00615	1.3E-17	937	955	No hit	No description
CDD	cd03362	2.81E-51	1093	1254	No hit	No description
PROSITE profile	PS50880	17.709	1093	1240	IPR006171	Toprim domain
SMART	SM00493	3.4E-17	1093	1230	IPR006171	Toprim domain
Gene3D	G3DSA:3.40.50.140	1.3E-49	1094	1259	IPR006171	Toprim domain
SuperFamily	SSF56712	6.28E-91	1094	1439	IPR023405	DNA topoisomerase, type IA, core domain
Pfam	PF01751	8.9E-17	1095	1241	IPR006171	Toprim domain
SMART	SM00436	7.0E-31	1233	1334	IPR003601	DNA topoisomerase, type IA, domain 2
Pfam	PF01131	2.0E-46	1261	1440	IPR013497	DNA topoisomerase, type IA, central
Gene3D	G3DSA:1.10.460.10	1.8E-13	1262	1328	IPR013824	DNA topoisomerase, type IA, central region, subdomain 1
Gene3D	G3DSA:1.10.460.10	1.8E-13	1375	1392	IPR013824	DNA topoisomerase, type IA, central region, subdomain 1
Gene3D	G3DSA:1.10.290.10	1.2E-13	1393	1440	IPR013826	DNA topoisomerase, type IA, central region, subdomain 3
PROSITE pattern	PS00396	0	1417	1431	IPR023406	DNA topoisomerase, type IA, active site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006265	Biological Process	DNA topological change
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003917	Molecular Function	DNA topoisomerase type I activity
GO:0008168	Molecular Function	methyltransferase activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1449 aa Download sequence Send to blast
MATGGKYTRV DNRRPSSASG CCSTVTVGVF VALCLVGVWM MTSSSVVPIQ NVDVPTEESK 60 SELKEQGSNN VGVKEQASDT NARQFEDNPG DLPDDATKGD SSDGAAQGGD KLQGKSEETT 120 EEKSVEKTQE TPEEKTQDKT EEKSEEKIEE KSEEKIEEKS EDGDSKVENG ELNSENGEKK 180 SDGGEKDKSD SGDNEKKSDD DSGKKLDKSE EANDTEKVEV TDTKESNGEK KENEQAKNQS 240 SNEVFPSVAQ SELLNETTTQ NSSWSTQSAE SKNEKEAQRA SDQKTSYNWK VCNSTAGPDF 300 IPCLDNLQAI KSLRSTKHYE HRERHCPEEA PSCLVPLPEG YRRPIEWPTS REKVWYYNVP 360 HTKLVQIKGH QNWVKVTGEY LTFPGGGTQF KHGALHYIDF IQQSVPDIAW GKRSRVILDV 420 GCGVASFGGF LFDRDVLAMS LAPKDEHEAQ VQFALERGIP AISAVMGTKR LPFPGQVFDV 480 VHCARCRVPW HIEGGKLLLE LNRVLRPGGF FVWSATPVYK KLGEDVEIWN AMKELTKSIC 540 WELVSITKDT VNGVGIAIYK KPTSNECYEK RSQNEPPICA KSDDPNAAWN VPLQSCIHKV 600 PVNATKRGSE WPEQWPXRLD KAPYWLLSSQ VGVYGKPAPE DFTSDNEHWK RVVTKSYLNG 660 MGINWKSVRN VMDMRAVYGG FAAALKDLKI WVMNVVSVDS PDTLPIIYER GLFGMYHDWC 720 ESFNTYPRSY DLLHADHLFS KLKKRCNLVA VVAEVDRILR PEGKLIVRDD VETIYELENM 780 ARSMQWEVSL TYSKDKEGLL CVQKSMWRPK ESETLKETDD ERLYVPSGGG GSPETPCSLK 840 SSTTATACAS ASNNNNNHQH HNHHNKEQDR FLPIANVGRI MKKVIPGNGK ISKDAKETVQ 900 ECVSEFISFV TGEASDKCQR EKRKTINGED IIWAITTLGF EDYVHPLKSY LHKYRDLEGE 960 KLNVPKQQRS EQRLHQQQQQ PDQXDHHNQT LLPYDNNSSS SVYSSTTNVI SQPSFMADHH 1020 QAFSLPFSPS SIQKQFQPQQ DQIDSVGHWL PEKSLRTIGV GASGKIQEVE FNSKAKSNGG 1080 XASRVVKMSG XIRVLNVAEK PSVAKSVATL LSGNQGQGLR VREGRSRYNK IYEFNYSING 1140 RPCHMLVTSV TGHLMELEFE DRFRKWHACD PALLFTAPVH KKVPEDKLDI KRTLEEEARR 1200 CQWLVLWLDC DREGENIAFE VIEVCTAVNR HLTIRRARFS ALTERDIYNA VQNLVNANKF 1260 FADAVDARQE IDLRIGASFT RFQTMLLRDA FVIDSTASDR NLVLSYGPCQ FPTLGFVVER 1320 YWEIQSHEPE EFWTINCSHR SDEGIATFHW MRGHLFDYAC AVVIYEMCVE EPTATVTKVR 1380 QQEKLKKPPN PLNTIQLEQR ASIYFRMSSE HTMKVAEELY QAGFISYPRT ETDGFSERTD 1440 LRVSNLFFY

Sequence ? help Back to Top

Protein Sequence Length: 1449 aa Download sequence Send to blast

MATGGKYTRV DNRRPSSASG CCSTVTVGVF VALCLVGVWM MTSSSVVPIQ NVDVPTEESK  60
SELKEQGSNN VGVKEQASDT NARQFEDNPG DLPDDATKGD SSDGAAQGGD KLQGKSEETT  120
EEKSVEKTQE TPEEKTQDKT EEKSEEKIEE KSEEKIEEKS EDGDSKVENG ELNSENGEKK  180
SDGGEKDKSD SGDNEKKSDD DSGKKLDKSE EANDTEKVEV TDTKESNGEK KENEQAKNQS  240
SNEVFPSVAQ SELLNETTTQ NSSWSTQSAE SKNEKEAQRA SDQKTSYNWK VCNSTAGPDF  300
IPCLDNLQAI KSLRSTKHYE HRERHCPEEA PSCLVPLPEG YRRPIEWPTS REKVWYYNVP  360
HTKLVQIKGH QNWVKVTGEY LTFPGGGTQF KHGALHYIDF IQQSVPDIAW GKRSRVILDV  420
GCGVASFGGF LFDRDVLAMS LAPKDEHEAQ VQFALERGIP AISAVMGTKR LPFPGQVFDV  480
VHCARCRVPW HIEGGKLLLE LNRVLRPGGF FVWSATPVYK KLGEDVEIWN AMKELTKSIC  540
WELVSITKDT VNGVGIAIYK KPTSNECYEK RSQNEPPICA KSDDPNAAWN VPLQSCIHKV  600
PVNATKRGSE WPEQWPXRLD KAPYWLLSSQ VGVYGKPAPE DFTSDNEHWK RVVTKSYLNG  660
MGINWKSVRN VMDMRAVYGG FAAALKDLKI WVMNVVSVDS PDTLPIIYER GLFGMYHDWC  720
ESFNTYPRSY DLLHADHLFS KLKKRCNLVA VVAEVDRILR PEGKLIVRDD VETIYELENM  780
ARSMQWEVSL TYSKDKEGLL CVQKSMWRPK ESETLKETDD ERLYVPSGGG GSPETPCSLK  840
SSTTATACAS ASNNNNNHQH HNHHNKEQDR FLPIANVGRI MKKVIPGNGK ISKDAKETVQ  900
ECVSEFISFV TGEASDKCQR EKRKTINGED IIWAITTLGF EDYVHPLKSY LHKYRDLEGE  960
KLNVPKQQRS EQRLHQQQQQ PDQXDHHNQT LLPYDNNSSS SVYSSTTNVI SQPSFMADHH  1020
QAFSLPFSPS SIQKQFQPQQ DQIDSVGHWL PEKSLRTIGV GASGKIQEVE FNSKAKSNGG  1080
XASRVVKMSG XIRVLNVAEK PSVAKSVATL LSGNQGQGLR VREGRSRYNK IYEFNYSING  1140
RPCHMLVTSV TGHLMELEFE DRFRKWHACD PALLFTAPVH KKVPEDKLDI KRTLEEEARR  1200
CQWLVLWLDC DREGENIAFE VIEVCTAVNR HLTIRRARFS ALTERDIYNA VQNLVNANKF  1260
FADAVDARQE IDLRIGASFT RFQTMLLRDA FVIDSTASDR NLVLSYGPCQ FPTLGFVVER  1320
YWEIQSHEPE EFWTINCSHR SDEGIATFHW MRGHLFDYAC AVVIYEMCVE EPTATVTKVR  1380
QQEKLKKPPN PLNTIQLEQR ASIYFRMSSE HTMKVAEELY QAGFISYPRT ETDGFSERTD  1440
LRVSNLFFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4cgy_A	1e-104	1082	1443	25	379	DNA TOPOISOMERASE 3-ALPHA
4cht_A	1e-104	1082	1443	26	380	DNA TOPOISOMERASE 3-ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.3907	0.0	bud\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008394173.2	0.0	probable methyltransferase PMT26
Refseq	XP_008394174.2	0.0	probable methyltransferase PMT26
Refseq	XP_017178626.2	0.0	probable methyltransferase PMT26
Swissprot	Q8L7V3	0.0	PMTQ_ARATH; Probable methyltransferase PMT26
TrEMBL	A0A498HRT9	0.0	A0A498HRT9_MALDO; Uncharacterized protein
STRING	XP_008394173.1	0.0	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	3e-57	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	MDP0000277077

Publications ? help Back to Top
Dunkley TP,Watson R,Griffin JL,Dupree P,Lilley KS Localization of organelle proteins by isotope tagging (LOPIT). Mol. Cell Proteomics, 2004. 3(11): p. 1128-34 [PMID:15295017] Nikolovski N,Shliaha PV,Gatto L,Dupree P,Lilley KS Label-free protein quantification for plant Golgi protein localization and abundance. Plant Physiol., 2014. 166(2): p. 1033-43 [PMID:25122472]