PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 433aa    MW: 48996.5 Da    PI: 9.0729
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276970genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.61.9e-2288132145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCs+++ + +k+CErH++rgr rsrk +e+
  MDP0000276970  88 DPEPGRCRRTDGKKWRCSKDAHPESKYCERHMNRGRYRSRKLVES 132
                    79***************************************9986 PP

2QLQ49.71.1e-172862236
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    FT aQ++++++Q+l++KyL a++PvP+eLl++i+
  MDP0000276970 28 LFTVAQWAEMENQALIFKYLKAGLPVPSELLAPIR 62
                   6********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.7E-92763IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.0572863IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-122962IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.76788132IPR014977WRC domain
PfamPF088794.6E-1989131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAKPLFSITV SKTEMSGSSV GNEGHAPLFT VAQWAEMENQ ALIFKYLKAG LPVPSELLAP  60
IRTSFNLISP NFLRHHPTLA SYSRKNMDPE PGRCRRTDGK KWRCSKDAHP ESKYCERHMN  120
RGRYRSRKLV ESQTSSQSLS TVTSDSVIGI CSHSGSFQSM PLHSMGNSGA LCFGSNASEL  180
KMESIPYGVS NRGTRPFHFI IRLYQYVQVG IVEKPYVSHI LLEIDFKTCY EFTVNRFGHR  240
FRNQRGVLIL CKCRGCNGSE EHNFVSEARS ARCLRADSNV DNPWLLMAPQ VPLKLEPRNS  300
SLWLNNSSHL QTLQNMEPLS VNAEITKHEY VGEEFGLPGS QKHEQHSLQP FFDEWPKSKD  360
LGFHQNDHRS NITELSMSNA TVPAKFFLRS AESPRVTYGL FINTYITSFS VAFVPWVSRQ  420
PSSHNNQQSL GEI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.112370.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365741.11e-171PREDICTED: growth-regulating factor 4-like
TrEMBLA0A2P6PAZ91e-136A0A2P6PAZ9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family
STRINGXP_009365741.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-35growth-regulating factor 2