PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000276970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GRF | ||||||||
Protein Properties | Length: 433aa MW: 48996.5 Da PI: 9.0729 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 70.6 | 1.9e-22 | 88 | 132 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ + +k+CErH++rgr rsrk +e+ MDP0000276970 88 DPEPGRCRRTDGKKWRCSKDAHPESKYCERHMNRGRYRSRKLVES 132 79***************************************9986 PP | |||||||
2 | QLQ | 49.7 | 1.1e-17 | 28 | 62 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT aQ++++++Q+l++KyL a++PvP+eLl++i+ MDP0000276970 28 LFTVAQWAEMENQALIFKYLKAGLPVPSELLAPIR 62 6********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.7E-9 | 27 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.057 | 28 | 63 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.2E-12 | 29 | 62 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.767 | 88 | 132 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.6E-19 | 89 | 131 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MAKPLFSITV SKTEMSGSSV GNEGHAPLFT VAQWAEMENQ ALIFKYLKAG LPVPSELLAP 60 IRTSFNLISP NFLRHHPTLA SYSRKNMDPE PGRCRRTDGK KWRCSKDAHP ESKYCERHMN 120 RGRYRSRKLV ESQTSSQSLS TVTSDSVIGI CSHSGSFQSM PLHSMGNSGA LCFGSNASEL 180 KMESIPYGVS NRGTRPFHFI IRLYQYVQVG IVEKPYVSHI LLEIDFKTCY EFTVNRFGHR 240 FRNQRGVLIL CKCRGCNGSE EHNFVSEARS ARCLRADSNV DNPWLLMAPQ VPLKLEPRNS 300 SLWLNNSSHL QTLQNMEPLS VNAEITKHEY VGEEFGLPGS QKHEQHSLQP FFDEWPKSKD 360 LGFHQNDHRS NITELSMSNA TVPAKFFLRS AESPRVTYGL FINTYITSFS VAFVPWVSRQ 420 PSSHNNQQSL GEI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.11237 | 0.0 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365741.1 | 1e-171 | PREDICTED: growth-regulating factor 4-like | ||||
TrEMBL | A0A2P6PAZ9 | 1e-136 | A0A2P6PAZ9_ROSCH; Putative transcription factor interactor and regulator C3H-WRC/GRF family | ||||
STRING | XP_009365741.1 | 1e-171 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4781 | 29 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 5e-35 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000276970 |