PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000276952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 820aa MW: 89870 Da PI: 5.6679 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.3 | 2.6e-08 | 68 | 95 | 1 | 27 |
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC+ff+r tC +G+ C++aHg+ MDP0000276952 68 WKTSLCSFFRREAkTCGHGSECRYAHGE 95 8**********99*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.2E-12 | 65 | 101 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.3E-6 | 65 | 100 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-4 | 67 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 67 | 96 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.0E-6 | 68 | 95 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS51687 | 47.692 | 243 | 820 | IPR010280 | (Uracil-5)-methyltransferase family |
SuperFamily | SSF53335 | 7.16E-44 | 245 | 271 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 7.16E-44 | 318 | 465 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 7.16E-44 | 497 | 621 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene3D | G3DSA:3.40.50.150 | 9.3E-64 | 519 | 621 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF13847 | 5.8E-8 | 565 | 624 | IPR025714 | Methyltransferase domain |
CDD | cd02440 | 8.24E-6 | 567 | 621 | No hit | No description |
Gene3D | G3DSA:3.40.50.150 | 9.3E-64 | 698 | 761 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 7.16E-44 | 709 | 762 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Pfam | PF05958 | 4.6E-7 | 714 | 757 | IPR010280 | (Uracil-5)-methyltransferase family |
PROSITE pattern | PS01230 | 0 | 717 | 749 | IPR030390 | RNA methyltransferase TrmA, active site |
Gene3D | G3DSA:3.40.50.150 | 9.3E-64 | 795 | 820 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 7.16E-44 | 804 | 820 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MSSTPTAEPS VTQLLNSPST LNGHDSTDLP QPPQDPATQP PDDAVSGDKR KREENDDVPN 60 PSAAPPLWKT SLCSFFRREA KTCGHGSECR YAHGEAELRP RPDNTWDPTS ERAKKQKLEE 120 EIEECMALDN VMMTEAVDDD GDGGSDAGGL DPELSKCLVH LPRNWKSEKL KEFLSEKART 180 GRNINKVMKV ADVIPRSFEK RTKSILAPRI PGVGLDGENV DDSMXANGSX DGDGTTGRSA 240 RKVVTPLAHM SYDDQLEHKK SSLMQILKRL TRNTHKACPD GIPLPEWIVK SRELDDSGSK 300 RLSAPIFAIV LATNLDGILX SPVVKGYRNK CEFSVGYSLQ GKVTVGFMLG NFRFFTKLNI 360 SRDGVTAVEE PFDCPNVSRI XSXYASIFQE FLQHSSLPIW NRFKNIGFWR QLTVREGRRP 420 GIATDSEHCE ANIVEVMLIV QVSSSGFDDA QITSEYERXA QAFAAGAAAS SPALPLTFLV 480 IQDHQGISNA APADAPLHXL SIPKAEGGSX KQAADSVVEP KIHDYINNLK FCISPTAFFQ 540 VNTPAAEKLY SLAGDWAQLG PDTLLFDVCC GTGTIGLTLA HRVGMVVGIE MNASAVSDAR 600 RNAEINDIKN CRXVCAKAED VMRSLLEEYT XASQKQDDLV SEGSDKVIVT EDEKAISMDN 660 KPNPEESSSH ELENGNTASE GLEIDKQEVR SQPQSSCTSE KGKTPVECFS NVVAIVDPPR 720 NGLHPTVIKA LRTHADLRKL VYISCNPETL VANAIELCTP SPEKIDKNKN RAWRNMGSAG 780 LARHRAKSMP ASEPFRPVKA MAVDIFPHTV HCELVMLLER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5xj1_A | 8e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_A | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_B | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_C | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5xj2_D | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq0_A | 8e-18 | 523 | 628 | 263 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
5zq1_A | 8e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_A | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zq8_B | 9e-18 | 523 | 628 | 262 | 371 | Uncharacterized RNA methyltransferase SP_1029 |
5zth_A | 8e-18 | 523 | 628 | 263 | 372 | Uncharacterized RNA methyltransferase SP_1029 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8026 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183485.2 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q8L7S3 | 0.0 | C3H24_ARATH; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A498KAR3 | 0.0 | A0A498KAR3_MALDO; Uncharacterized protein | ||||
STRING | XP_008359111.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8854 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28450.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000276952 |
Publications ? help Back to Top | |||
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