PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276952
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 820aa    MW: 89870 Da    PI: 5.6679
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276952genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-086895127
                   --S---SGGGGTS.--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                   +kt+lC+ff+r   tC +G+ C++aHg+
  MDP0000276952 68 WKTSLCSFFRREAkTCGHGSECRYAHGE 95
                   8**********99*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-1265101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.3E-665100IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-46795IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1786796IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-66895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5168747.692243820IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533357.16E-44245271IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.16E-44318465IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.16E-44497621IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1509.3E-64519621IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138475.8E-8565624IPR025714Methyltransferase domain
CDDcd024408.24E-6567621No hitNo description
Gene3DG3DSA:3.40.50.1509.3E-64698761IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.16E-44709762IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059584.6E-7714757IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300717749IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1509.3E-64795820IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533357.16E-44804820IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MSSTPTAEPS VTQLLNSPST LNGHDSTDLP QPPQDPATQP PDDAVSGDKR KREENDDVPN  60
PSAAPPLWKT SLCSFFRREA KTCGHGSECR YAHGEAELRP RPDNTWDPTS ERAKKQKLEE  120
EIEECMALDN VMMTEAVDDD GDGGSDAGGL DPELSKCLVH LPRNWKSEKL KEFLSEKART  180
GRNINKVMKV ADVIPRSFEK RTKSILAPRI PGVGLDGENV DDSMXANGSX DGDGTTGRSA  240
RKVVTPLAHM SYDDQLEHKK SSLMQILKRL TRNTHKACPD GIPLPEWIVK SRELDDSGSK  300
RLSAPIFAIV LATNLDGILX SPVVKGYRNK CEFSVGYSLQ GKVTVGFMLG NFRFFTKLNI  360
SRDGVTAVEE PFDCPNVSRI XSXYASIFQE FLQHSSLPIW NRFKNIGFWR QLTVREGRRP  420
GIATDSEHCE ANIVEVMLIV QVSSSGFDDA QITSEYERXA QAFAAGAAAS SPALPLTFLV  480
IQDHQGISNA APADAPLHXL SIPKAEGGSX KQAADSVVEP KIHDYINNLK FCISPTAFFQ  540
VNTPAAEKLY SLAGDWAQLG PDTLLFDVCC GTGTIGLTLA HRVGMVVGIE MNASAVSDAR  600
RNAEINDIKN CRXVCAKAED VMRSLLEEYT XASQKQDDLV SEGSDKVIVT EDEKAISMDN  660
KPNPEESSSH ELENGNTASE GLEIDKQEVR SQPQSSCTSE KGKTPVECFS NVVAIVDPPR  720
NGLHPTVIKA LRTHADLRKL VYISCNPETL VANAIELCTP SPEKIDKNKN RAWRNMGSAG  780
LARHRAKSMP ASEPFRPVKA MAVDIFPHTV HCELVMLLER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A8e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5xj2_A9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5xj2_B9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5xj2_C9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5xj2_D9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5zq0_A8e-18523628263372Uncharacterized RNA methyltransferase SP_1029
5zq1_A8e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5zq8_A9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5zq8_B9e-18523628262371Uncharacterized RNA methyltransferase SP_1029
5zth_A8e-18523628263372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80260.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017183485.20.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A498KAR30.0A0A498KAR3_MALDO; Uncharacterized protein
STRINGXP_008359111.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]