PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000276921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | GeBP | ||||||||
Protein Properties | Length: 495aa MW: 53727.4 Da PI: 10.4781 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 43.9 | 6.7e-14 | 2 | 48 | 48 | 98 |
DUF573 48 kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +v+k+ql +KirrLKkK++++vkk k+++ +k+hdqk+f+lskk+Wgs MDP0000276921 2 DVNKTQLQDKIRRLKKKYETNVKK----KKFNPTKPHDQKVFDLSKKVWGS 48 89**********************....99999****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 7.6E-14 | 2 | 47 | IPR007592 | Protein of unknown function DUF573 |
SMART | SM00414 | 6.6E-78 | 367 | 487 | IPR002119 | Histone H2A |
CDD | cd00074 | 4.66E-69 | 372 | 484 | No hit | No description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-61 | 372 | 486 | IPR009072 | Histone-fold |
Pfam | PF00125 | 5.4E-13 | 376 | 453 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 5.8E-51 | 378 | 400 | IPR002119 | Histone H2A |
SuperFamily | SSF47113 | 1.65E-42 | 380 | 484 | IPR009072 | Histone-fold |
PROSITE pattern | PS00046 | 0 | 386 | 392 | IPR032458 | Histone H2A conserved site |
PRINTS | PR00620 | 5.8E-51 | 407 | 422 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 5.8E-51 | 422 | 435 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 5.8E-51 | 436 | 450 | IPR002119 | Histone H2A |
Pfam | PF16211 | 5.8E-18 | 456 | 489 | IPR032454 | Histone H2A, C-terminal domain |
PRINTS | PR00620 | 5.8E-51 | 464 | 482 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
VDVNKTQLQD KIRRLKKKYE TNVKKKKFNP TKPHDQKVFD LSKKVWGSSS SGEGSSGVSG 60 VSEQPKSNGK VRNTKTLASI RADSLSSPEP PKEAAKVDFG LNPCSSESLS EVIGFDKGFG 120 KLGLPEGVVK QGLELIGGPK RAELKEKWRK LHVAELELFV KRSELMRDQT KRNGVGFGLR 180 VWFICRHKAV VVFQILTLEP SEVVSDVQYK GVRFVSGRQS NPLSWWRNGE YACADFRARP 240 TPVQPPTKAL EPLIGPSLDI HNLELLPELP NSVVAAFGPP LFSNFRFRPL GSFAGVESCG 300 DEGTEGPLTR GGGGAGEAGK KWRENWSWGA AGKWGFGVER EEPEDNLRFS ISLSPRNPPL 360 SESMAGRGKS IGSGTAKKAT SRSSKAGLQF PVGRIARFLK AGKYAERVGA GAPVYLAAVL 420 EYLAAEVLEL AGNAARDNKK TRIVPRHIQL AVRNDEELSK LLGAVTIANG GVMPNIHNML 480 LPKKTGTGKS GPAED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5oy7_e | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
5x0x_C | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
5x0x_G | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6ftx_C | 6e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6ftx_G | 6e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6g0l_G | 6e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6i84_Q | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6i84_V | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6j99_C | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6j99_G | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6n1z_B | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6n1z_E | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6ne3_C | 6e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6ne3_G | 6e-60 | 364 | 494 | 1 | 130 | Histone H2A type 1 |
6o96_C | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6o96_G | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6om3_C | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6om3_G | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6om3_O | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
6om3_S | 7e-60 | 364 | 494 | 1 | 130 | Histone H2A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 25 | RRLKKKYETNVKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1688 | 0.0 | bud| cell culture| fruit| leaf| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498IXL3 | 1e-174 | A0A498IXL3_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000276921 |