PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276235
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family BES1
Protein Properties Length: 747aa    MW: 83810 Da    PI: 6.1557
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276235genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822135.36.4e-421132501132
         DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpl..eeaeaagssas...asp 90 
                    gg++r ++++E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++ k++ p     ++aa++s+s   +sp
  MDP0000276235 113 GGARRCRPMEEKERTKLRERQRRAITARILAGLRRHGNYNLRVRADINDVVXALAREAGWVVLPDGTTFPsKSQGPRlaGVNSAAVTSSSsqiVSP 208
                    6899*****************************************************************955555557744444444444123566 PP

         DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislas 132
                     ++  ++ ++s  +sp e  ++ +k +  ps s +d  s+a 
  MDP0000276235 209 RTPACLKGVTSGYQSPGELNASNTKGVYLPSLSPYDLPSSAX 250
                    6666677789999******************99999887664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.4E-37115243IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.96E-176294733IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.4E-195296733IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.8E-101303723IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67334348IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67355373IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67377398IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060381389IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008426.2E-8460469IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.9E-67470492IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67543562IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67577593IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67594605IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.9E-67612635IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.2E-8615625IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007504.9E-67652674IPR001554Glycoside hydrolase, family 14
PRINTSPR008426.2E-8703717IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008426.2E-8718732IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MRWNSRRKWR IPAKVESNAR IRPSQXVLEG ETNKEIMETG LQKLITSEED DDEEMEMDVK  60
EEDGGDDEDG EKHVDTSQMM AGVDGEMPTI SNNNNRLQQX HQFQEQVGTP GGGGARRCRP  120
MEEKERTKLR ERQRRAITAR ILAGLRRHGN YNLRVRADIN DVVXALAREA GWVVLPDGTT  180
FPSKSQGPRL AGVNSAAVTS SSSQIVSPRT PACLKGVTSG YQSPGELNAS NTKGVYLPSL  240
SPYDLPSSAX SQGSSIVGDG AGQTESHPLI GGSMDNVGNK QIVDIPLKLQ ERDFSSTAYI  300
PVYVMLPLGV INMKCELVDP DGLLKQLRVL KSVSVDGIMV DCWWGIVEGH APQEYNWNGY  360
KRLFXMVCEL KLKLQVVMSF HECGGNVGDD VCVPLPHWVX EIGRSNPDIF FTDREGRXNP  420
ECLSWGIDKE RXLRGRTAVE VYFDCMRSFR VEFDKYFKNG NISMIQVGLG PCGELRYPSC  480
PVKHGWRYPG VGEFQCYDQY LLKSLRKAAE ARGHSFWGRG PDNAGSYNSR PNETGFFSDG  540
GEYDGYYGRF FLNWYSQVLV DHGDRVLSLA KLAFDGTCIA AKXSGLHWWY KTXSHAAELT  600
AGFYNPCNRD GYSPIATMLK KHEATLSLAC TELHMLDQHE DFQEALGDSE GLFWQVLNAA  660
WDVCLPVSSE NALACHDRIS YNKILDNAKP LTXPDGRHLS SFTYLRLSPL LMERDNFMEF  720
ERFVKRMHGK TAFTTALFLI QFDALLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wds_A1e-14529973311447Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.149091e-135stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340422.10.0PREDICTED: LOW QUALITY PROTEIN: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A498KK020.0A0A498KK02_MALDO; Beta-amylase
STRINGXP_009340422.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]