PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000276000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 76aa MW: 8381.12 Da PI: 10.608 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 129.8 | 7.3e-41 | 12 | 76 | 6 | 70 |
S1FA 6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +akGlnPG+ivl+vv gll++flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe MDP0000276000 12 SDAKGLNPGMIVLIVVVGLLMIFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 76 589*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 3.1E-39 | 13 | 76 | IPR006779 | DNA binding protein S1FA |
ProDom | PD019013 | 0.004 | 15 | 76 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MADQFEDKVP PSDAKGLNPG MIVLIVVVGL LMIFLVGNYA LYVYAQRTLP PKKKKPVSKK 60 KLKKERLKQG VSAPGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2206 | 1e-129 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355638.1 | 3e-47 | DNA-binding protein S1FA | ||||
Swissprot | Q7XLX6 | 7e-20 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | W9SCA3 | 4e-25 | W9SCA3_9ROSA; DNA-binding protein S1FA1 | ||||
STRING | XP_008355638.1 | 1e-46 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5409 | 33 | 55 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000276000 |
Publications ? help Back to Top | |||
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