PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000275704

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 794aa MW: 86869.4 Da PI: 6.5074

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000275704	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.8	4.4e-100	432	793	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ +++ + ++ pp++ ++ ++ ++ a+k+fsevsP+l+f ++t MDP0000275704 432 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLMNN--PATF--PPPRTLTPFDVFFKMGAYKVFSEVSPLLQFVNFT 523 679************************************************9..4444..5899999999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.. 189 +Nqa+lea++ ++++Hi+Dfdi+ G++W++++q+L +R+ ++pslRiT+++sp++++ el ++++L++fA+e+g++fe +v+ + l++ MDP0000275704 524 CNQALLEALSDADQIHIVDFDIGFGAHWASFMQELPTRNrgISAPSLRITAFASPSTHHPVELGLMRDNLTQFANEIGISFELDVVNLDYLDQNsy 619 ***********************************55569*************************************86665554411 PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 +l ++++ Ea+aVn+ + ++ +++ +l++ vL++vk+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ +k+ MDP0000275704 620 SLPIFQTNDSEAVAVNFPI--WSTSNQPDALPN----VLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALQSYINLLESLDAV-NVTSDAVSKI 708 444557777****99..555566777777....*****************************************665.579*** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er+ll+++i++ v + + ++ W++ + +aGF+pvp+s+++++qa++++++ + +g++ve++++slvl+W++r+L+s+SaWr MDP0000275704 709 ERFLLQPKIESTVLGRLRT----PDKMPIWKALFASAGFTPVPFSNFTETQAECVVKRNPARGFHVEKRQESLVLCWQRRELISASAWR 793 *********998887....999************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.504	405	773	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-97	432	793	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MPFQFQQGKG VVEIATASLP AIFTDSSCSK YKDGGFFNHQ HHSFPTGEPN SVLHMRRSPS 60 PPTSASTLSS SFNNGGGGGD KSTSLAAETL PAGGPASSKD EWACXLQSIR SGGLEAVTGS 120 GGGVEKCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH 180 HNSPIDFDSN AGLGIVDQGP NFDIIGSSGV SVPNFRFAGS GFSNGGNNGS NGKVGYVPPG 240 SGSFGLLNYK VSKVGLMHNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS 300 PDEKPQILNP QLFMSNQTQQ PQNPNFFMPL AYAQQEQYHL LQSQPKRHNS GSNVDLSTHQ 360 IQKGQFSDPR HEIFVRHQQQ QQLGFAQGMR FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH 420 QQQQQELQDT LLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ 480 LLMNNPATFP PPRTLTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI 540 VDFDIGFGAH WASFMQELPT RNRGISAPSL RITAFASPST HHPVELGLMR DNLTQFANEI 600 GISFELDVVN LDYLDQNSYS LPIFQTNDSE AVAVNFPIWS TSNQPDALPN VLRFVKQLSP 660 KIVVSLDRGC DRSDLPFPQH ILQALQSYIN LLESLDAVNV TSDAVSKIER FLLQPKIEST 720 VLGRLRTPDK MPIWKALFAS AGFTPVPFSN FTETQAECVV KRNPARGFHV EKRQESLVLC 780 WQRRELISAS AWRC

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MPFQFQQGKG VVEIATASLP AIFTDSSCSK YKDGGFFNHQ HHSFPTGEPN SVLHMRRSPS  60
PPTSASTLSS SFNNGGGGGD KSTSLAAETL PAGGPASSKD EWACXLQSIR SGGLEAVTGS  120
GGGVEKCGLG LGGLEDWETM LSETAASPAH DQSLLRWIAG DVDDMSCGLK QLLQSGNGNH  180
HNSPIDFDSN AGLGIVDQGP NFDIIGSSGV SVPNFRFAGS GFSNGGNNGS NGKVGYVPPG  240
SGSFGLLNYK VSKVGLMHNN GGTNSVNCNI QNPIFSNSSN TVALPVSLPA VYGQQQFESS  300
PDEKPQILNP QLFMSNQTQQ PQNPNFFMPL AYAQQEQYHL LQSQPKRHNS GSNVDLSTHQ  360
IQKGQFSDPR HEIFVRHQQQ QQLGFAQGMR FLPQQHHIQQ KPLMVPKQTV VLGNGEEMTH  420
QQQQQELQDT LLDQLYKAAE LVGTGNFSHA QGILARLNHQ LSPVGKPLQR AAFYFKEALQ  480
LLMNNPATFP PPRTLTPFDV FFKMGAYKVF SEVSPLLQFV NFTCNQALLE ALSDADQIHI  540
VDFDIGFGAH WASFMQELPT RNRGISAPSL RITAFASPST HHPVELGLMR DNLTQFANEI  600
GISFELDVVN LDYLDQNSYS LPIFQTNDSE AVAVNFPIWS TSNQPDALPN VLRFVKQLSP  660
KIVVSLDRGC DRSDLPFPQH ILQALQSYIN LLESLDAVNV TSDAVSKIER FLLQPKIEST  720
VLGRLRTPDK MPIWKALFAS AGFTPVPFSN FTETQAECVV KRNPARGFHV EKRQESLVLC  780
WQRRELISAS AWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-32	450	793	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12192	0.0	bud\| fruit\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008377890.2	0.0	scarecrow-like protein 22
TrEMBL	A0A498K152	0.0	A0A498K152_MALDO; Uncharacterized protein
STRING	XP_008377890.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-124	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000275704