PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000275252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 272aa MW: 30456 Da PI: 8.6678 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.4 | 5.5e-20 | 194 | 227 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C++tkTp+WR+gp g+ktLCnaCG++yr+ + MDP0000275252 194 CTHCQVTKTPQWREGPLGPKTLCNACGVRYRSGR 227 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.571 | 188 | 224 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.9E-16 | 188 | 238 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.8E-15 | 191 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 192 | 225 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.54E-16 | 193 | 240 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 194 | 219 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 9.1E-18 | 194 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MTAVSADVTK LTKRERPNRV LRELGIRACA VNISDMDGSL PTDGAFNYES FLGNDILSAL 60 DFPMEDIDDS VEDNDWDXKF QDIEPPPNID QLLGPGIFSY DDKKKHTNLS TPRTRSKLSR 120 SRRANPVTFS TQFIPSTSSN SSATENLYHW DACKFDIESS RTEDMLNTTK RKQKKKTGKL 180 TTDEPGESRE AKRCTHCQVT KTPQWREGPL GPKTLCNACG VRYRSGRLFP EYRPAASPTF 240 VAAVHSNSHK KVIELRSKGC QEAVMGILSS AR |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.745 | 1e-150 | bud |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008359133.2 | 0.0 | GATA transcription factor 11-like isoform X1 | ||||
TrEMBL | A0A498INN6 | 1e-167 | A0A498INN6_MALDO; Uncharacterized protein | ||||
STRING | XP_008359133.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54810.2 | 3e-38 | GATA family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000275252 |