PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000275117
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 386aa    MW: 41458.3 Da    PI: 7.4515
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000275117genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.42.5e-08190215227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    kt+lC+ +     Ck+Gd+C+FaHg+
  MDP0000275117 190 KTRLCNKYNTVEGCKFGDKCHFAHGE 215
                    8*********99************96 PP
2zf-CCCH33.85.5e-11353378127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++t+lC +f + GtC +GdrC+FaHg+
  MDP0000275117 353 FRTKLCENFTK-GTCTFGDRCHFAHGQ 378
                    589********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.512138151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-14186219IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8187219IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535188216IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023188215IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5190215IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.31E-14250330IPR004088K Homology domain, type 1
SMARTSM003228.3E-10258328IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.6E-14258328IPR004088K Homology domain, type 1
PROSITE profilePS5008413.565259323IPR004088K Homology domain, type 1
CDDcd001051.52E-12261323No hitNo description
PfamPF000134.8E-10261325IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.3E-16350383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-9351382IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7352378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.99352379IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8353378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MASLSLPKKV ACSLLSFILA GVLGVNCLFI FNLRKSCEIV WGFGVFFGNL YADELVDIVV  60
DCGAVPVLVK HLQAPFSATD SRKSPIPYEQ EVEKGLEGME GWRAREDEGV LELYCELSYI  120
XXLXTFSAVI FXLCTSGCPF GEGCHFLHYV PGGIKAVSQM TGSNPTHPPP PRNSAAPPSF  180
PDGSSPPAVK TRLCNKYNTV EGCKFGDKCH FAHGEWELGR PTAQSYEDPR AGAGFPGRMG  240
GRMESAPPAH GAVASFGATA TAKISVDASL AGAIIGKNGV HSKQICRVTG AKLSIREHET  300
DHKLRNIELE GTLDQIKDAS AMVRELIGNV SSGAGPHNMR NPAMSASSPA SNFRTKLCEN  360
FTKGTCTFGD RCHFAHGQEE LRRSAM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138120.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375050.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R08e-96C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498K8X90.0A0A498K8X9_MALDO; Uncharacterized protein
STRINGXP_009375050.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-58C3H family protein