PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274788
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 929aa    MW: 102475 Da    PI: 7.4679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274788genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.1e-13334415179
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 
                    f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     ++ +L +gD+
  MDP0000274788 334 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLLAGDI 415
                    89**************************555566778***************9989999999***9.**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0135903696IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.104.3E-25331461IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-14331415IPR015300DNA-binding pseudobarrel domain
CDDcd100179.75E-17332454No hitNo description
PROSITE profilePS508638.713334443IPR003340B3 DNA binding domain
SMARTSM010192.4E-10334428IPR003340B3 DNA binding domain
PfamPF023625.0E-11334415IPR003340B3 DNA binding domain
PROSITE profilePS5105014.181595645IPR011124Zinc finger, CW-type
PfamPF074968.5E-12600642IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MSSSSSSSKV CYNSECKEVK SEFPRKGWRL RTGEYCELCD RCYVAYEEGR FCETFHTNAA  60
GWRCCESCGK RVHCGCIVSS HAFTLLDPGG IECMTCARKN YVMTSNPAWP TSMFFHSPLS  120
ERLKDLSTKN WTQLAGSGPV PWRQAPSLFN SSIPSSELHT RVPHEVDGST GINKLNASER  180
IFVSTLEKKK VEEFSERLMK VNLSIGTQQS LENGIGNPGI NHEEKSSSCL NISQQSASLK  240
EEPSTPQFVP YGSPSETNPQ LGVTGTNLRP IAPLAKNYNG NGVESSGDNQ IRNARPRADA  300
RGRNQLLPRY WPRFTDQELQ HISGDKNSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF  360
PPISQPEGLP LKVQDSKGKE WIFQFRFWPN NNSRMYVLEG VTPCIQSMQL LAGDIGNDIT  420
SLEKFLMNVR SLSVFPVTFS RLEPEGKLVM GFRKASTSLQ SDQENEANKT TNGVSVHAEG  480
SESRSFLSMN QVELADPSSW SNVDKSGYIA KEALEDKSLI PKKRKNSNLG SKSKRLRIEN  540
EDLIELKVTW EEAQGLLRPP ANHVPTVVVI EGFEFEEYED APILGKPTIY ATGRAGEKIQ  600
WVQCEDCFKW RKLPINALLP SKWTCSENSW DPERSLCSAA QELTTEQLQD LLPRCNTVAS  660
KKMKAAKQDP DNIEVLEGLD TLANLAILGE GESLPSSAQA TTKHPRHRPG CSCIVCIQPP  720
SGKGPKHKQT CTCNVCLTVK RRFRTLMMRR EKKQSDKEAE TTRRKQHKGQ LLVVDKQEDD  780
TLSYCNVGSS SPNQKIEILE LSDDDLNMTK SSTSPFKGQI DLNIQPERED ELSPGSDSGG  840
MMKLLHDATA RYLRQQRLSS SGGSEKSSGN GSQRAASEAG GGGGGEPLSN GVNLESSNGV  900
NLENSNHDSS NDCPATLSIK PSASMTATG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-583124582127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138570.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920702e-40KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371294.10.0B3 domain-containing protein Os07g0563300-like
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A498JTS50.0A0A498JTS5_MALDO; Uncharacterized protein
STRINGXP_008371294.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1