PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000274554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 299aa MW: 33668.1 Da PI: 7.6379 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 40.8 | 3.7e-13 | 36 | 75 | 18 | 57 |
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 lF +++yp++e++ +LA+ l+L+e+q++ WF+ rR k+k+ MDP0000274554 36 LFPEHKYPTEEMKSQLAEXLRLSEKQISGWFCHRRLKDKR 75 6999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 5.22E-10 | 26 | 75 | No hit | No description |
SMART | SM00389 | 2.2E-5 | 27 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-10 | 36 | 75 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 13.232 | 37 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-13 | 37 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.42E-11 | 37 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MALEKFYNGK DASLRVCFVF LSFEXSNFSK ECSFLLFPEH KYPTEEMKSQ LAEXLRLSEK 60 QISGWFCHRR LKDKRLSRDE TQANGRQDRS SVVIQDRASG LGQDSCGSTK HGEHRFVDPR 120 EVESRRLSGH DFTSADITRE YRSHYTERVG DMDNTSSESS SSLQDRLLTR KEDPYDVETS 180 RYLTHTKGME NMGYKPSGFM KVKGEAENAA ITAVKRQLGR QYWEDGPLLG VEFDLLPRGA 240 FESPIIGSGH EPSTIGNTVL RSPDISGVKG QLSPSTVSRP NAFLLHFDRS GVGKGVTTL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.5887 | 0.0 | cell culture| leaf| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028944617.1 | 1e-175 | uncharacterized protein LOC103430831 isoform X1 | ||||
TrEMBL | A0A251PRQ3 | 1e-139 | A0A251PRQ3_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251PSY1 | 1e-139 | A0A251PSY1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008375850.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008391024.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5792 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 9e-68 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000274554 |