PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274400
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 428aa    MW: 48310.1 Da    PI: 9.447
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274400genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.36.4e-2481124144
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                    d+epgrCrRtDGKkWRCs+++  ++k+CErH+hrg++rsrk++e
  MDP0000274400  81 DPEPGRCRRTDGKKWRCSKEAFLDSKYCERHMHRGKNRSRKPVE 124
                    79***************************************987 PP
2QLQ56.21e-191145236
            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                   +FT++Q+q+L++Q+l+yKy++++  +Pp+Ll+ ++
  MDP0000274400 11 PFTPSQWQELEHQALIYKYMVSGISIPPDLLFSLK 45
                   8******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.911146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.4E-141143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.12881125IPR014977WRC domain
PfamPF088794.7E-2082124IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSSTGRSGRF PFTPSQWQEL EHQALIYKYM VSGISIPPDL LFSLKRSSCS LDSPLPPKIF  60
SHHPPHIGWN CFQMGLGRKI DPEPGRCRRT DGKKWRCSKE AFLDSKYCER HMHRGKNRSR  120
KPVEVLKTPP ISTPKSSNTS TSTTKINACS ASPSPAAFHS LSSSLSSLSS SDSHPYPFLY  180
HHHSPSSRPP GIGFPHQERN TTSLFLDSGS YPQPSSEYRP VDHGNVGEFG LSRLARRCAL  240
CVFMPVGQSN VPVFGLCRCV FVVIGLRRNR YAYGMKEEVD EHAFFSEPSG TVRGFSGSSS  300
MDDSWQFTPL TISTSSSSKQ RSCSAFQSDQ QDQQLRSIKH QKQDHHQQQQ HYYAMDRNEG  360
SQKTVHRFFD EWPPKDKDSW LDLDDKSSNS GSVSTTRLSI SIPTSGHDFP VFTSRHHNSK  420
LTYKCIYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700702e-48KC770070.1 Pyrus pyrifolia microsatellite TXY185 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950979.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A498HVV50.0A0A498HVV5_MALDO; Uncharacterized protein
STRINGXP_008344035.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-52growth-regulating factor 5