PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000274000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 346aa MW: 39661.4 Da PI: 7.4321 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.6e-12 | 210 | 235 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ MDP0000274000 210 YQPDICKDYKETGYCGYGDSCKFMHD 235 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.49E-9 | 207 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-10 | 210 | 235 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 210 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.8E-13 | 270 | 333 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 9.84E-13 | 285 | 328 | No hit | No description |
Pfam | PF13920 | 3.7E-8 | 285 | 326 | No hit | No description |
PROSITE profile | PS50089 | 10.586 | 286 | 324 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 1.4E-4 | 286 | 323 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 4.54E-7 | 286 | 327 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 301 | 310 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MDAFAEEGKM LTWETFRFLS AGLAALGYIL ETKTVFIKRM NLVCNFFRKP SRRQNIRKRR 60 TDEDEEEDDS KSGTSLSNQR KAPKAAGKLF FXNGPSKSSV SDDRAVFEFE SSKEIQVEND 120 SRATATXETE TEFSRDARAV RERVLKRAEE ALKGRGKTTG NEKLYKGIHG YTDYKAGFRR 180 ELTVASEKAR GAHGPLRASA HIRTSTRFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK 240 SXWQMEKEWD EAEKARKRNL AMGEDDVDES EEDDDDEDDG XLPFACLICR QPFVDPVVTK 300 CNHYFCEHCA LKHHSKNKKC FVCDKPTLGI FNTAHEIRKR MAAEGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 7e-62 | 111 | 341 | 105 | 317 | RING finger protein 113A |
5z58_M | 7e-62 | 111 | 341 | 105 | 317 | RING finger protein 113A |
6ff4_t | 7e-62 | 111 | 341 | 105 | 317 | RING finger protein 113A |
6ff7_t | 7e-62 | 111 | 341 | 105 | 317 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009336799.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_009336800.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_009336801.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_009336802.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 1e-158 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A498JHE9 | 0.0 | A0A498JHE9_MALDO; Uncharacterized protein | ||||
STRING | XP_008347174.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7082 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-148 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000274000 |