PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000274000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 346aa    MW: 39661.4 Da    PI: 7.4321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000274000genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12210235126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  MDP0000274000 210 YQPDICKDYKETGYCGYGDSCKFMHD 235
                    67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.49E-9207240IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7209236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878209237IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10210235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12210240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.8E-13270333IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578509.84E-13285328No hitNo description
PfamPF139203.7E-8285326No hitNo description
PROSITE profilePS5008910.586286324IPR001841Zinc finger, RING-type
SMARTSM001841.4E-4286323IPR001841Zinc finger, RING-type
CDDcd001624.54E-7286327No hitNo description
PROSITE patternPS005180301310IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDAFAEEGKM LTWETFRFLS AGLAALGYIL ETKTVFIKRM NLVCNFFRKP SRRQNIRKRR  60
TDEDEEEDDS KSGTSLSNQR KAPKAAGKLF FXNGPSKSSV SDDRAVFEFE SSKEIQVEND  120
SRATATXETE TEFSRDARAV RERVLKRAEE ALKGRGKTTG NEKLYKGIHG YTDYKAGFRR  180
ELTVASEKAR GAHGPLRASA HIRTSTRFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK  240
SXWQMEKEWD EAEKARKRNL AMGEDDVDES EEDDDDEDDG XLPFACLICR QPFVDPVVTK  300
CNHYFCEHCA LKHHSKNKKC FVCDKPTLGI FNTAHEIRKR MAAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-62111341105317RING finger protein 113A
5z58_M7e-62111341105317RING finger protein 113A
6ff4_t7e-62111341105317RING finger protein 113A
6ff7_t7e-62111341105317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336799.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336800.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336801.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_009336802.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-158C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A498JHE90.0A0A498JHE9_MALDO; Uncharacterized protein
STRINGXP_008347174.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-148C3H family protein