PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000273851
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 576aa    MW: 62350.6 Da    PI: 6.4657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000273851genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.47e-24238292259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK  kg+++pr+YYrC+ + +Cpv    +rs+ed +++++tYeg+Hnh+
  MDP0000273851 238 YDGCQWRKYGQKIAKGNPCPRAYYRCSVSaSCPV----QRSSEDMSILTTTYEGSHNHP 292
                    59*************************9989995....67999***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-24222294IPR003657WRKY domain
SuperFamilySSF1182906.93E-21230294IPR003657WRKY domain
PROSITE profilePS5081123.238232294IPR003657WRKY domain
SMARTSM007745.8E-28237293IPR003657WRKY domain
PfamPF031063.0E-20239292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MPKRPSKALM ENDNTHEESS SLGKTILEDK TVKSDGDHEE GTPMEITKDE LQSAKAEMVE  60
ATEENERLKL LLSQISKDYQ SLQMHFHGLL QNGGETKKCT DTSGSTALDL THEQNTEEAD  120
LVSLSLGRTS SSIDQPRKDG RIKKISQLNT NGKDDDDDNG MLNGAGLALE LGCKFEPAAD  180
QSTDNSSGGP KEDDLAEIWP PSKTLKTTRS RDDEVSQQTH LKKARVSVRV RCDDHTIYDG  240
CQWRKYGQKI AKGNPCPRAY YRCSVSASCP VQRSSEDMSI LTTTYEGSHN HPLPMSATAM  300
ASTTSAAASM LQSHSSTSQQ DLINSTTAPI SASTNLEGVN FSGTSTLSQN SRLPQKHFYF  360
PNSSISTNNS HPTITLDLTV PSPSHFGIFP SASGSSFSSN PRYPSTSLNF SSSLDHNNAL  420
QLQSPWNNIN HTASGYFNYG NRINQVGSAL NVGKQPIFQE HNILYQSYSY IQNKKPSPPP  480
LHHPQMFTDS MATATKAITS NPNFQSALAA ALTSFVGNGS TSSTTGIRES HLSTGTIVES  540
ASGLKLKRGE SLTSNSIFPS GQNGIGCASS YLNESL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-16224294174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008389514.20.0probable WRKY transcription factor 61 isoform X2
TrEMBLA0A498IDE80.0A0A498IDE8_MALDO; Uncharacterized protein
STRINGXP_008389514.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-54WRKY DNA-binding protein 72