PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000273325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family S1Fa-like
Protein Properties Length: 118aa    MW: 13283.7 Da    PI: 10.4734
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000273325genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA126.86.6e-4053118570
           S1FA   5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                     ++akG+nPGlivl+vv glll+flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe
  MDP0000273325  53 XQDAKGFNPGLIVLIVVVGLLLLFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 118
                    5789*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.00250118No hitNo description
PfamPF046896.8E-3954118IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MADQFEDKVP PSVLFLRNPK SPAIYSEILI FRLWNLDLDF SNFQLIIGPV VIXQDAKGFN  60
PGLIVLIVVV GLLLLFLVGN YALYVYAQRT LPPKKKKPVS KKKLKKERLK QGVSAPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.22067e-88fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008387615.14e-38DNA-binding protein S1FA-like
SwissprotQ7XLX68e-17S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A498IEU61e-36A0A498IEU6_MALDO; Uncharacterized protein
STRINGXP_008387615.12e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3834122
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]