PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000273325 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 118aa MW: 13283.7 Da PI: 10.4734 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 126.8 | 6.6e-40 | 53 | 118 | 5 | 70 |
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++akG+nPGlivl+vv glll+flvgny+lyvyaq++lPP+kkkPvskkklk+e+lkqGv++PGe MDP0000273325 53 XQDAKGFNPGLIVLIVVVGLLLLFLVGNYALYVYAQRTLPPKKKKPVSKKKLKKERLKQGVSAPGE 118 5789*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 0.002 | 50 | 118 | No hit | No description |
Pfam | PF04689 | 6.8E-39 | 54 | 118 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MADQFEDKVP PSVLFLRNPK SPAIYSEILI FRLWNLDLDF SNFQLIIGPV VIXQDAKGFN 60 PGLIVLIVVV GLLLLFLVGN YALYVYAQRT LPPKKKKPVS KKKLKKERLK QGVSAPGE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2206 | 7e-88 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008387615.1 | 4e-38 | DNA-binding protein S1FA-like | ||||
Swissprot | Q7XLX6 | 8e-17 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | A0A498IEU6 | 1e-36 | A0A498IEU6_MALDO; Uncharacterized protein | ||||
STRING | XP_008387615.1 | 2e-37 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38341 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000273325 |
Publications ? help Back to Top | |||
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