PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000273201
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 741aa    MW: 83612.1 Da    PI: 4.5043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000273201genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.5e-14107154354
            AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                     kGVr++k +g+++AeI+d + +   r r +lg+f taeeAa+a+ + ++++e
  MDP0000273201 107 PKGVRRRK-WGKYAAEIQDpF-Q---RIRKWLGTFNTAEEAAAAYQQKKREFE 154
                    59***998.**********55.3...5******************99998876 PP
2zf-B_box25.23.5e-08429472340
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                    +r C+ +  k++++fC  ++ +lC+ C  + H+       H++v
  MDP0000273201 429 ARACDSCLVKRARWFCXADDAFLCQRCDASVHSAnqlasrHERV 472
                    678*****************************667888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.949106170IPR001471AP2/ERF domain
PfamPF008477.0E-8107154IPR001471AP2/ERF domain
PRINTSPR003671.9E-6107118IPR001471AP2/ERF domain
SMARTSM003803.7E-12108176IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-13108153IPR016177DNA-binding domain
CDDcd000186.27E-11108138No hitNo description
Gene3DG3DSA:3.30.730.101.3E-17108153IPR001471AP2/ERF domain
PRINTSPR003671.9E-6129145IPR001471AP2/ERF domain
PROSITE profilePS5011910.736427474IPR000315B-box-type zinc finger
SMARTSM003361.2E-10427474IPR000315B-box-type zinc finger
PfamPF006438.7E-7429472IPR000315B-box-type zinc finger
CDDcd000213.31E-9430474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MPGMKTVVLN QHVSWNKLKK KQPAMEENAG YMKRIRIIYN DPDATDYSSE DGEEYDIEGN  60
LFQHCKRFVS EILVVETECE SSXGTNGGKI GHRMGFGDSK KCNRVLPKGV RRRKWGKYAA  120
EIQDPFQRIR KWLGTFNTAE EAAAAYQQKK REFETIQSQQ KIKSRRKNIQ LSDKHEFESS  180
QLMEGAKHEL QGVPLSEEGQ DSSFCHPSPS SVLEISGSAS LSFELEKLKE ESCVEVSGGE  240
GAVQQPVFEE EESIPMLPPL DVEQLNLGCD GNYMYSSLLD QFFDGMCDIV DDGMTDXVDY  300
PVCNDKKGEV ICLPPLDSDF GQQDFSWIDQ KPEQVSRKEA DCLPSIYDXI XIXFLSRNFS  360
TATIIYEKPV HIQRQEDRCP SAAKQNRNFG ELHNPLLPYH TSKFSVCCCC CCNMITDKKA  420
ANAMGGNTAR ACDSCLVKRA RWFCXADDAF LCQRCDASVH SANQLASRHE RVRLQGSSFK  480
ANEPMQLTAD QATPAWHNGF KRKARXPRHN NKPGFAVKEE QEKLGLHPPL PFVPEIGCEE  540
ANLMEXEENE DLEQLLYRVP IYDPFAAKLC NISSTDQVEN NTDXINLDDE EIEIRNMGNN  600
HEGVQDDLDK LGGFLPTDME LAEFAADVEN LLGGGLDEDC SDIKGVLGLL DEGKEVKVEE  660
EVEGMEFNPS ILDWSLDYDQ SSAVPVQMGS EDKEEEEKLV LLTGAQSSDE MAFMENKQMV  720
MKRKKICLRL DYETXITAWA X
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113KGVRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.226190.0fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324380.0GU732438.1 Malus x domestica AP2 domain class transcription factor (AP2D14) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68520.17e-36B-box type zinc finger protein with CCT domain