PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000273175
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 433aa    MW: 49436.3 Da    PI: 5.1666
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000273175genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.15.2e-371102031103
                    HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
   HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                    aFl+k+y+i++d+++++++sws+++nsfvvld+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+ll++
  MDP0000273175 110 AFLTKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFAMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGQKHLLKN 196
                    69*****************************************************************99.........****************** PP

                    XXXXXXX CS
   HSF_DNA-bind  97 ikrkkse 103
                    i+r+k +
  MDP0000273175 197 IRRRKAS 203
                    ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-39106200IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-36107200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-61107200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-20111134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-32111200IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-20149161IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340150174IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-20162174IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MLNNLEGCES RSSIWELSRL DLSCLAAGGS LGSRWVATCV AIDATWAALV WAAYVQKLLT  60
ALGANQGLWV CGGATATMAA RAENPLTTHP FVRCPIYNWR LKLYDQGPPA FLTKTYDIVD  120
DPSTNHIVSW SRDNNSFVVL DPNSFAMSLL PRYFKHNNFS SFVRQLNTYG FRKVDTDRWE  180
FANEAFLRGQ KHLLKNIRRR KASHLPQASQ KTLDSCVEVG RFGLDIEIDQ LRRDKQVLMG  240
ELVKLRQQQQ ANRVYLQGME DRLKRTELKQ QHMLSFLARA MQNPNFVQQL SQXKDLRKEL  300
EEAVTKKRRR TIEKGPSNVE VDEFGQVGVE TFVKVEPQEX GDISDQFEVS ELDQFAIDMP  360
GVSRSQNVHG DQECKERDEE HEGRGKDLDK GFWQDLFNEN IDEEIGLLGV QEEDEEDVNV  420
LIEELGFLAP SPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2710920318123Heat shock factor protein 1
5d5u_B1e-2710920027129Heat shock factor protein 1
5d5v_B1e-2710920027129Heat shock factor protein 1
5d5v_D1e-2710920027129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341007.20.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-114HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A498HGN30.0A0A498HGN3_MALDO; Uncharacterized protein
STRINGXP_008341007.10.0(Malus domestica)
STRINGXP_008362032.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-116heat shock transcription factor A6B