PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000272980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 416aa MW: 46654.7 Da PI: 9.2147 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 139.3 | 3.2e-43 | 166 | 312 | 2 | 131 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaesss 79 gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+sktieWL++++k aik+l + + + MDP0000272980 166 SGKKDRHSKIYTAQGPRDRRMRLSVQIARKFFDLQDTLGFDKASKTIEWLFTKSKSAIKDLKQHllvspkedynstnggataK------------V 249 69**************************************************************9988766655444433221............2 PP TCP 80 ssasnsssg..........kaaksaa.kskksqksaasalnlakesrakarararertrekmr 131 +s++n + + + a+ + + ++k++ + +a+esr +arararertrekm+ MDP0000272980 250 NSSENTTGEvasrimepssSDANGDIsVGFGREKRNRKLCVVARESRVEARARARERTREKMM 312 22221111133444555433344444244455555555677788*****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-40 | 167 | 312 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 36.285 | 168 | 226 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.048 | 293 | 310 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 416 aa Download sequence Send to blast |
MVSSSSTTSN FQLPFLCDDN QTNAIIDDFH QNPNSILSHG GHHQYYSQYY YSEDQQQQAP 60 EFLEHDGMLL SYLLSQQQLL LGXXSTTTNV ATDYNPTRAH ESTEISIAAS NSNKAMEVIH 120 RDXEDGRNEL TINTAAASKI KINNVKINGG GGGGEKKANV ARKRASGKKD RHSKIYTAQG 180 PRDRRMRLSV QIARKFFDLQ DTLGFDKASK TIEWLFTKSK SAIKDLKQHL LVSPKEDYNS 240 TNGGATAKVN SSENTTGEVA SRIMEPSSSD ANGDISVGFG REKRNRKLCV VARESRVEAR 300 ARARERTREK MMRIRGFDQD HQHLTKQSPK HQEQQNPNEL FETAGMMNST MMSTNCRNXG 360 QKIVGRTSSG CGGAQRSLLN FDFWRHVSEA SGANSEDCGF SRELGSNQLH QEYYYR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008352929.2 | 0.0 | uncharacterized protein LOC103416466 | ||||
TrEMBL | A0A498HMF5 | 0.0 | A0A498HMF5_MALDO; Uncharacterized protein | ||||
STRING | XP_008352929.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 2e-30 | TCP domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000272980 |