PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000272600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 68aa MW: 7562.86 Da PI: 8.5047 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 24.5 | 7.3e-08 | 3 | 27 | 2 | 23 |
DUF260 2 CaaCkvlrrkCakdCvlapyf...p 23 C++C+vlr++C++ C+l+ ++ MDP0000272600 3 CNGCRVLRKGCSDTCILRSCLywiD 27 *******************995543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.5E-4 | 3 | 27 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
MGCNGCRVLR KGCSDTCILR SCLYWIDSTE AQGSILAACF FSVGLSLRWR ISMSTRLSDI 60 NPKVRPDC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23857 | 1e-41 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354105.1 | 1e-14 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 3e-13 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A498JAZ2 | 3e-37 | A0A498JAZ2_MALDO; Uncharacterized protein | ||||
STRING | XP_009354105.1 | 4e-14 | (Pyrus x bretschneideri) | ||||
STRING | XP_008363136.1 | 7e-15 | (Malus domestica) | ||||
STRING | XP_008373879.1 | 7e-15 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-15 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000272600 |